Cla018399 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla018399 T283292_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.731 0.880
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.715 0.880
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018399 Myb 133 178

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28288.m000014 Ricinus communis 28288.m000014 I 0.788
29610.m000410 Ricinus communis 29610.m000410 I 0.688
29681.m001296 Ricinus communis 29681.m001296 I 0.698
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.715
Bo3g032160 Brassica oleracea Bo3g032160 I 0.715
Bo4g029810 Brassica oleracea Bo4g029810 I 0.715
Bo4g187390 Brassica oleracea Bo4g187390 I 0.705
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.705
Bra000038 Brassica rapa Bra000038 I 0.715
Bra005139 Brassica rapa Bra005139 I 0.705
Bra017138 Brassica rapa Bra017138 I 0.705
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.715
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.715
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.676
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.693
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.688
cassava30173.valid.m1 Manihot esculenta cassava30173.valid.m1 I 0.746
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.772
Ca_19327 Cicer arietinum Ca_19327 I 0.710
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.742
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.699
Cla004397 Citrullus lanatus Cla004397 I 0.704
Cla013553 Citrullus lanatus Cla013553 I 0.666
Cla018243 Citrullus lanatus Cla018243 I 0.761
Cucsa.067080 Cucumis sativus Cucsa.067080 I 0.902
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.666
Cucsa.176140 Cucumis sativus Cucsa.176140 I 0.725
Eucgr.B02800 Eucalyptus grandis Eucgr.B02800 I 0.701
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.687
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.756
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.686
fgenesh2_kg.4__1876__AT2G38090.1 Arabidopsis lyrata fgenesh2_kg.4__1876__AT2G38090.1 I 0.739
gene07984-v1.0-hybrid Fragaria vesca gene07984-v1.0-hybrid I 0.682
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.746
GLYMA01G27720 Glycine max GLYMA01G27720 I 0.723
GLYMA03G14440 Glycine max GLYMA03G14440 I 0.723
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.714
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.663
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.714
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.772
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.741
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.730
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.677
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.716
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.768
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.683
Lus10035518.g Linum usitatissimum Lus10035518.g I 0.711
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.683
MDP0000142580 Malus domestica MDP0000142580 I 0.751
MDP0000221993 Malus domestica MDP0000221993 I 0.751
MDP0000277813 Malus domestica MDP0000277813 I 0.707
MDP0000809640 Malus domestica MDP0000809640 I 0.677
mgf022442m Mimulus guttatus mgf022442m I 0.689
MTR_5g069710 Medicago truncatula MTR_5g069710 I 0.662
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.721
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.742
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.699
PGSC0003DMG400019129 Solanum tuberosum PGSC0003DMG400019129 I 0.728
PGSC0003DMG400020344 Solanum tuberosum PGSC0003DMG400020344 I 0.685
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.668
PGSC0003DMG400030348 Solanum tuberosum PGSC0003DMG400030348 I 0.676
PK27693.1 Cannabis sativa PK27693.1 D 0.731
Pm000529 Prunus mume Pm000529 I 0.669
Pm002536 Prunus mume Pm002536 I 0.746
Pm018878 Prunus mume Pm018878 I 0.713
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.737
POPTR_0006s09860 Populus trichocarpa POPTR_0006s09860 I 0.745
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.682
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.695
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.774
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.746
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.713
SapurV1A.0001s0790 Salix purpurea SapurV1A.0001s0790 I 0.744
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.663
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.663
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.695
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.696
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.767
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.767
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.668
Solyc06g076770.2 Solanum lycopersicum Solyc06g076770.2 I 0.676
Solyc09g014250.2 Solanum lycopersicum Solyc09g014250.2 I 0.685
Solyc10g076820.1 Solanum lycopersicum Solyc10g076820.1 I 0.728
TCM_021750 Theobroma cacao TCM_021750 I 0.752
TCM_041672 Theobroma cacao TCM_041672 I 0.665
Thhalv10017008m.g Eutrema salsugineum Thhalv10017008m.g I 0.739
VIT_06s0004g06100 Vitis vinifera VIT_06s0004g06100 I 0.667
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.729
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.678