Cucsa.175460 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.175460 T284450_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.772 0.850
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.714 0.771
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.697 0.757
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.691 0.729
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.691 0.729
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.662 0.721
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.175460.1 Myb 59 105
Cucsa.175460.1 Myb 111 157
Cucsa.175460.1 Myb 163 208
Cucsa.175460.2 Myb 59 105
Cucsa.175460.2 Myb 111 157
Cucsa.175460.2 Myb 163 208
Cucsa.175460.3 Myb 59 105
Cucsa.175460.3 Myb 111 157
Cucsa.175460.3 Myb 163 208
Cucsa.175460.4 Myb 59 105
Cucsa.175460.4 Myb 111 157
Cucsa.175460.4 Myb 163 208

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_13991 Ancylostoma caninum ANCCAN_13991 I 0.000
ANCDUO_19569 Ancylostoma duodenale ANCDUO_19569 I 0.000
ASIM_0000241101 Anisakis simplex ASIM_0000241101 I 0.000
ASIM_0000264301 Anisakis simplex ASIM_0000264301 I 0.000
ASIM_0001608201 Anisakis simplex ASIM_0001608201 I 0.000
Bm2567 Brugia malayi Bm2567 D 0.000
BTMF_0001653601 Brugia timori BTMF_0001653601 I 0.000
BTMF_0001659501 Brugia timori BTMF_0001659501 I 0.000
BXY_0200700 Bursaphelenchus xylophilus BXY_0200700 I 0.000
BXY_0352300 Bursaphelenchus xylophilus BXY_0352300 I 0.000
CBG09413 Caenorhabditis briggsae CBG09413 D 0.000
CBN06605 Caenorhabditis brenneri CBN06605 D 0.000
CJA05020 Caenorhabditis japonica CJA05020 I 0.000
CJA05633_CONSTRUCT PBM CONSTRUCTS CJA05633_CONSTRUCT D 0.000
CJA37832 Caenorhabditis japonica CJA37832 I 0.000
CRE31027 Caenorhabditis remanei CRE31027 I 0.000
DME_0001004201 Dracunculus medinensis DME_0001004201 I 0.000
EEL_0000689901 Elaeophora elaphi EEL_0000689901 I 0.000
EVEC_0001123001 Enterobius vermicularis EVEC_0001123001 I 0.000
Hba_18605 Heterorhabditis bacteriophora Hba_18605 I 0.000
L596_g998 Steinernema carpocapsae L596_g998 I 0.000
L889_g10733 Steinernema feltiae L889_g10733 I 0.000
L892_g22881 Steinernema scapterisci L892_g22881 I 0.000
L892_g27879 Steinernema scapterisci L892_g27879 I 0.000
L893_g31098 Steinernema glaseri L893_g31098 I 0.000
L898_g30067 Steinernema monticolum L898_g30067 I 0.000
L898_g33808 Steinernema monticolum L898_g33808 I 0.000
LOAG_11460 Loa loa LOAG_11460 I 0.000
nAv.1.0.1.g01085 Acanthocheilonema viteae nAv.1.0.1.g01085 I 0.000
nAv.1.0.1.g09212 Acanthocheilonema viteae nAv.1.0.1.g09212 I 0.000
NBR_0000774001 Nippostrongylus brasiliensis NBR_0000774001 I 0.000
nDi.2.2.2.g08811 Dirofilaria immitis nDi.2.2.2.g08811 I 0.000
nDi.2.2.2.g10419 Dirofilaria immitis nDi.2.2.2.g10419 I 0.000
NECAME_07661 Necator americanus NECAME_07661 I 0.000
nLs.2.1.2.g05589 Litomosoides sigmodontis nLs.2.1.2.g05589 I 0.000
nOo.2.0.1.g05035 Onchocerca ochengi nOo.2.0.1.g05035 I 0.000
OESDEN_09202 Oesophagostomum dentatum OESDEN_09202 I 0.000
PTRK_0001597400 Parastrongyloides trichosuri PTRK_0001597400 I 0.000
SPAL_0001233100 Strongyloides papillosus SPAL_0001233100 I 0.000
SVE_0753200 Strongyloides venezuelensis SVE_0753200 I 0.000
SVE_1703300 Strongyloides venezuelensis SVE_1703300 I 0.000
TCLT_0000243901 Thelazia callipaeda TCLT_0000243901 I 0.000
TELCIR_05158 Teladorsagia circumcincta TELCIR_05158 I 0.000
dmd-10 Caenorhabditis elegans WBGene00007929 D 0.000
dmd-3 Caenorhabditis elegans WBGene00012832 D 0.000
WBGene00242643 Onchocerca volvulus WBGene00242643 I 0.000
WUBG_11979 Wuchereria bancrofti WUBG_11979 D 0.000