Gorai.001G263600 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.001G263600 T287481_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.777 0.849
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.777 0.849
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.683 0.785
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.683 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G263600.1 Myb 259 305
Gorai.001G263600.1 Myb 311 356

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29917.m001977 Ricinus communis 29917.m001977 I 0.722
30147.m013937 Ricinus communis 30147.m013937 I 0.688
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.682
MYB118 Arabidopsis thaliana AT3G27785 D 0.777
MYB98 Arabidopsis thaliana AT4G18770 D 0.683
Bo2g144970 Brassica oleracea Bo2g144970 I 0.725
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.790
Bra025299 Brassica rapa Bra025299 I 0.772
Bra033027 Brassica rapa Bra033027 I 0.749
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.806
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.806
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.713
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.688
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.741
Ca_07482 Cicer arietinum Ca_07482 I 0.665
Ca_17087 Cicer arietinum Ca_17087 I 0.670
Ca_17294 Cicer arietinum Ca_17294 I 0.687
Ca_19427 Cicer arietinum Ca_19427 I 0.706
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.760
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.688
Cla010586 Citrullus lanatus Cla010586 I 0.721
Cla019490 Citrullus lanatus Cla019490 I 0.688
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.688
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.713
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.761
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.688
F775_22212 Aegilops tauschii F775_22212 I 0.677
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.787
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.697
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.737
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.695
GLYMA05G08761 Glycine max GLYMA05G08761 N 0.681
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.806
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.776
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.661
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.688
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.661
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.684
GSMUA_Achr3G09050_001 Musa acuminata GSMUA_Achr3G09050_001 N 0.701
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.740
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.698
Lus10005864.g Linum usitatissimum Lus10005864.g I 0.691
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.688
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.719
MDP0000199939 Malus domestica MDP0000199939 I 0.733
MDP0000215359 Malus domestica MDP0000215359 I 0.688
MDP0000319656 Malus domestica MDP0000319656 I 0.700
mg025334m Mimulus guttatus mg025334m I 0.666
mgf024290m Mimulus guttatus mgf024290m I 0.697
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.704
MTR_4g088015 Medicago truncatula MTR_4g088015 I 0.677
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.666
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.665
MTR_7g037260 Medicago truncatula MTR_7g037260 I 0.700
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.760
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.688
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.716
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.716
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.666
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.686
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.714
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.713
Pm000541 Prunus mume Pm000541 I 0.697
Pm015681 Prunus mume Pm015681 I 0.754
Pm024743 Prunus mume Pm024743 I 0.713
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.709
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.697
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.763
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.713
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.661
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.725
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.664
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.690
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.683
Si039046m.g Setaria italica Si039046m.g I 0.681
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.714
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.713
TCM_012087 Theobroma cacao TCM_012087 I 0.688
TCM_016909 Theobroma cacao TCM_016909 I 0.823
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.799
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.682
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.689
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.677
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.677
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.677
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.730
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.733