GPLIN_000669800 (Globodera pallida)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 GPLIN_000669800 T308678_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GA30480
M02409_2.00 		Drosophila pseudoobscura
RAGATCAM
KTGATCTY		 PBM
Weirauch et al.(2014)
pTH5877 		0.978 0.871
Hr51
M06432_2.00 		Drosophila melanogaster
AMRDATCARARGW
WCYTYTGATHYKT		 B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012 		0.978 0.871
NR2E3
M00373_2.00 		Homo sapiens
NRAGATCAMN
NKTGATCTYN		 PBM
Barrera et al.(2016)
NR2E3_REF 		0.965 0.814
Nr2e3
M02708_2.00 		Mus musculus
AAGCTTD
HAAGCTT		 SELEX
Mathelier et al.(2014)
MA0164.1 		0.965 0.814
Nr2e3
M09328_2.00 		Mus musculus
NAAGTCAAAARKCA
TGMYTTTTGACTTN		 Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C 		0.965 0.814
NR2E3
M00372_2.00 		Homo sapiens
AAAGATCA
TGATCTTT		 PBM
Barrera et al.(2016)
NR2E3_R77Q 		0.965 0.800
NR2E3
M00370_2.00 		Homo sapiens
NNNWRABATCANN
NNTGATVTYWNNN		 PBM
Barrera et al.(2016)
NR2E3_R76Q 		0.960 0.800
NR2E3
M00371_2.00 		Homo sapiens
NNNHAATWTRTNN
NNAYAWATTDNNN		 PBM
Barrera et al.(2016)
NR2E3_R76W 		0.954 0.800
NR2E3
M00369_2.00 		Homo sapiens
NGGGRTCAHN
NDTGAYCCCN		 PBM
Barrera et al.(2016)
NR2E3_G56R 		0.946 0.800
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000669800 Nuclear receptor 400 470

Links

Other Nuclear receptor family TFs
Other Globodera pallida TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL007190 Aedes aegypti AAEL007190 I 0.979
AALB001133 Anopheles albimanus AALB001133 I 0.979
Aan_R004022 Calypte anna Aan_R004022 I 0.976
AARA003887 Anopheles arabiensis AARA003887 I 0.979
AATE003142 Anopheles atroparvus AATE003142 I 0.979
ACOM026748 Anopheles coluzzii ACOM026748 I 0.979
ACYPI007601 Acyrthosiphon pisum ACYPI007601 I 0.979
ACYPI009360 Acyrthosiphon pisum ACYPI009360 I 0.759
ADAC006988 Anopheles darlingi ADAC006988 I 0.979
AEPI011067 Anopheles epiroticus AEPI011067 I 0.979
AFAF011447 Anopheles farauti AFAF011447 I 0.979
Afo_R007066 Aptenodytes forsteri Afo_R007066 I 0.976
Alligator_sinensis_CCG020979.1 Alligator sinensis Alligator_sinensis_CCG020979.1 I 0.978
AMEM000983 Anopheles merus AMEM000983 I 0.979
ANCCAN_05510 Ancylostoma caninum ANCCAN_05510 I 0.986
ANCCEY_01724 Ancylostoma ceylanicum ANCCEY_01724 I 0.986
ASU_07884 Ascaris suum ASU_07884 I 0.986
BGLB004019 Biomphalaria glabrata BGLB004019 I 0.976
Bm4485 Brugia malayi Bm4485 I 0.986
BTMF_0001091401 Brugia timori BTMF_0001091401 I 0.986
BXY_0327700 Bursaphelenchus xylophilus BXY_0327700 I 0.986
CapteG171557 Capitella teleta CapteG171557 I 0.978
CBG14155 Caenorhabditis briggsae CBG14155 I 0.986
CBN22518 Caenorhabditis brenneri CBN22518 I 0.986
CGI_10007932 Crassostrea gigas CGI_10007932 I 0.978
CGI_10028920 Crassostrea gigas CGI_10028920 I 0.756
CGOC_0000187501 Cylicostephanus goldi CGOC_0000187501 I 0.986
CJA07370 Caenorhabditis japonica CJA07370 I 0.986
Cmyd_10012017 Chelonia mydas Cmyd_10012017 I 0.978
CRE00427 Caenorhabditis remanei CRE00427 I 0.986
csin100859 Clonorchis sinensis csin100859 I 0.984
D917_05007 Trichinella nativa D917_05007 I 0.981
D917_09121 Trichinella nativa D917_09121 I 0.758
D918_07443 Trichuris suis D918_07443 I 0.978
DAPPUDRAFT_106791 Daphnia pulex DAPPUDRAFT_106791 I 0.973
DAPPUDRAFT_299738 Daphnia pulex DAPPUDRAFT_299738 I 0.751
DICVIV_11193 Dictyocaulus viviparus DICVIV_11193 I 0.986
ECPE_0000243601 Echinostoma caproni ECPE_0000243601 I 0.985
EFV56045 Trichinella spiralis EFV56045 I 0.981
EFV59616 Trichinella spiralis EFV59616 I 0.758
NR2E3 Anolis carolinensis ENSACAG00000011910 I 0.978
ENSAMEG00000008835 Ailuropoda melanoleuca ENSAMEG00000008835 I 0.922
ENSAMXG00000017872 Astyanax mexicanus ENSAMXG00000017872 I 0.978
NR2E3 Bos taurus ENSBTAG00000014236 I 0.965
ENSBTAP00000048604-D1 Bos grunniens ENSBTAP00000048604-D1 I 0.965
NR2E3 Callithrix jacchus ENSCJAG00000018552 I 0.965
NR2E3 Cavia porcellus ENSCPOG00000008974 I 0.965
ENSCSAG00000013721 Chlorocebus sabaeus ENSCSAG00000013721 I 0.965
nr2e3 Danio rerio ENSDARG00000045904 I 0.978
NR2E3 Equus caballus ENSECAG00000015192 I 0.965
ENSFALG00000009699 Ficedula albicollis ENSFALG00000009699 I 0.976
NR2E3 Felis catus ENSFCAG00000031082 I 0.965
NR2E3 Homo sapiens ENSG00000278570 D 0.965
nr2e3 Gasterosteus aculeatus ENSGACG00000004739 I 0.961
NR2E3 Gasterosteus aculeatus ENSGACG00000017060 I 0.978
NR2E3 Gallus gallus ENSGALG00000002093 I 0.976
NR2E3 Gorilla gorilla ENSGGOG00000004383 I 0.965
ENSGMOG00000008342 Gadus morhua ENSGMOG00000008342 I 0.959
ENSGMOG00000019194 Gadus morhua ENSGMOG00000019194 I 0.978
ENSLACG00000022378 Latimeria chalumnae ENSLACG00000022378 I 0.978
ENSLOCG00000014973 Lepisosteus oculatus ENSLOCG00000014973 I 0.978
ENSMEUG00000016597 Macropus eugenii ENSMEUG00000016597 I 0.971
NR2E3 Meleagris gallopavo ENSMGAG00000001449 I 0.767
NR2E3 Myotis lucifugus ENSMLUG00000008408 I 0.965
NR2E3 Macaca mulatta ENSMMUG00000019276 I 0.965
NR2E3 Monodelphis domestica ENSMODG00000001949 I 0.971
ENSMPUG00000017103 Mustela putorius furo ENSMPUG00000017103 I 0.965
Nr2e3 Mus musculus ENSMUSG00000032292 D 0.965
ENSNLEG00000013807 Nomascus leucogenys ENSNLEG00000013807 I 0.965
ENSOARG00000018808 Ovis aries ENSOARG00000018808 I 0.965
NR2E3 Otolemur garnettii ENSOGAG00000006128 I 0.965
ENSONIG00000007109 Oreochromis niloticus ENSONIG00000007109 I 0.978
ENSONIG00000015396 Oreochromis niloticus ENSONIG00000015396 I 0.964
NR2E3 Ochotona princeps ENSOPRG00000006427 I 0.965
NR2E3 Oryzias latipes ENSORLG00000000011 I 0.978
nr2e3 Oryzias latipes ENSORLG00000007175 I 0.973
ENSPANG00000016257 Papio anubis ENSPANG00000016257 I 0.965
NR2E3 Procavia capensis ENSPCAG00000014733 I 0.965
ENSPFOG00000006106 Poecilia formosa ENSPFOG00000006106 I 0.978
ENSPFOG00000006516 Poecilia formosa ENSPFOG00000006516 I 0.973
ENSPMAG00000009792 Petromyzon marinus ENSPMAG00000009792 I 0.982
NR2E3 Pan troglodytes ENSPTRG00000007242 I 0.965
NR2E3 Pteropus vampyrus ENSPVAG00000009088 I 0.965
Nr2e3 Rattus norvegicus ENSRNOG00000050690 I 0.965
NR2E3 Sus scrofa ENSSSCG00000004978 I 0.963
ENSSTOG00000012080 Ictidomys tridecemlineatus ENSSTOG00000012080 I 0.965
NR2E3 Tupaia belangeri ENSTBEG00000011672 I 0.963
ENSTGUG00000004498 Taeniopygia guttata ENSTGUG00000004498 I 0.976
NR2E3 Tetraodon nigroviridis ENSTNIG00000005150 I 0.948
NR2E3 Takifugu rubripes ENSTRUG00000015582 I 0.978
NR2E3 Tursiops truncatus ENSTTRG00000009410 I 0.965
ENSXMAG00000010311 Xiphophorus maculatus ENSXMAG00000010311 I 0.978
ENSXMAG00000015842 Xiphophorus maculatus ENSXMAG00000015842 I 0.973
EVEC_0000564801 Enterobius vermicularis EVEC_0000564801 I 0.983
e_gw.107.44.1 Branchiostoma floridae e_gw.107.44.1 I 0.978
e_gw.324.28.1 Branchiostoma floridae e_gw.324.28.1 I 0.978
Hr51 Drosophila melanogaster FBgn0034012 D 0.978
GF13031 Drosophila ananassae FBgn0090064 I 0.978
GH20426 Drosophila grimshawi FBgn0127889 I 0.978
GI19610 Drosophila mojavensis FBgn0142347 I 0.978
GL17752 Drosophila persimilis FBgn0155355 I 0.978
GD11109 Drosophila simulans FBgn0182865 I 0.978
GJ14974 Drosophila virilis FBgn0202177 I 0.978
GK20892 Drosophila willistoni FBgn0222886 I 0.978
GE13645 Drosophila yakuba FBgn0231304 I 0.978
GA30480 Drosophila pseudoobscura FBgn0264774 D 0.978
GB49738 Apis mellifera GB49738 I 0.978
genemark-nMf.1.1.scaf00188-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00188-processed-gene-0.4 I 0.985
Gfo_R008863 Geospiza fortis Gfo_R008863 I 0.976
Hba_15323 Heterorhabditis bacteriophora Hba_15323 I 0.986
HCOI01781300 Haemonchus contortus HCOI01781300 I 0.986
HelroG139475 Helobdella robusta HelroG139475 I 0.979
HHAL007294-PA Halyomorpha halys HHAL007294-PA I 0.767
Hsal_07902--XP_396999.3_APIME Harpegnathos saltator Hsal_07902--XP_396999.3_APIME I 0.978
ISCW010891 Ixodes scapularis ISCW010891 I 0.766
ISCW019467 Ixodes scapularis ISCW019467 I 0.790
L596_g2163 Steinernema carpocapsae L596_g2163 I 0.984
L798_02234 Zootermopsis nevadensis L798_02234 I 0.976
L889_g11978 Steinernema feltiae L889_g11978 I 0.984
L892_g9366 Steinernema scapterisci L892_g9366 I 0.984
L893_g28297 Steinernema glaseri L893_g28297 I 0.984
L898_g15355 Steinernema monticolum L898_g15355 I 0.984
LDEC022044 Leptinotarsa decemlineata LDEC022044 I 0.978
LOAG_06205 Loa loa LOAG_06205 I 0.986
LotgiG130367 Lottia gigantea LotgiG130367 I 0.756
LotgiG137595 Lottia gigantea LotgiG137595 I 0.978
MDOA010244 Musca domestica MDOA010244 I 0.978
MhA1_Contig1792.frz3.gene6 Meloidogyne hapla MhA1_Contig1792.frz3.gene6 I 0.985
Myotis_brandtii_NR2E3_10027281 Myotis brandtii Myotis_brandtii_NR2E3_10027281 I 0.965
nAv.1.0.1.g01891 Acanthocheilonema viteae nAv.1.0.1.g01891 I 0.984
nDi.2.2.2.g10236 Dirofilaria immitis nDi.2.2.2.g10236 I 0.985
NEMVEDRAFT_v1g169225 Nematostella vectensis NEMVEDRAFT_v1g169225 I 0.814
nLs.2.1.2.g01701 Litomosoides sigmodontis nLs.2.1.2.g01701 I 0.986
nOo.2.0.1.g01040 Onchocerca ochengi nOo.2.0.1.g01040 I 0.986
nOo.2.0.1.g10097 Onchocerca ochengi nOo.2.0.1.g10097 I 0.986
nOo.2.0.1.g11611 Onchocerca ochengi nOo.2.0.1.g11611 I 0.986
NV14480 Nasonia vitripennis NV14480 I 0.978
OESDEN_00114 Oesophagostomum dentatum OESDEN_00114 I 0.870
OFLC_0000991001 Onchocerca flexuosa OFLC_0000991001 I 0.986
Ogr12843 Ophisaurus gracilis Ogr12843 I 0.978
PHUM039420 Pediculus humanus PHUM039420 I 0.978
PHUM331460 Pediculus humanus PHUM331460 I 0.770
Ppa-fax-1 Pristionchus pacificus PPA00264 I 0.984
Ppa-nhr-3 Pristionchus pacificus PPA28597 I 0.785
PTRK_0000446300 Parastrongyloides trichosuri PTRK_0000446300 I 0.984
Pvit_13689 Pogona vitticeps Pvit_13689 I 0.978
RPRC002557 Rhodnius prolixus RPRC002557 I 0.978
RPRC007025 Rhodnius prolixus RPRC007025 I 0.759
RSKR_0000698500 Rhabditophanes kr3021 RSKR_0000698500 I 0.985
Sakowv30007027m.g Saccoglossus kowalevskii Sakowv30007027m.g I 0.984
SBAD_0000006401 Soboliphyme baturini SBAD_0000006401 I 0.987
scaffold296-EXSNAP2012.8 Pristionchus exspectatus scaffold296-EXSNAP2012.8 I 0.984
scaffold395-EXSNAP2012.23 Pristionchus exspectatus scaffold395-EXSNAP2012.23 I 0.785
SMAR005628 Strigamia maritima SMAR005628 I 0.920
SMAR006008 Strigamia maritima SMAR006008 I 0.785
Smp_167770 Schistosoma mansoni Smp_167770 I 0.983
SMRZ_0000841101 Schistosoma margrebowiei SMRZ_0000841101 I 0.983
SMTD_0001566201 Schistosoma mattheei SMTD_0001566201 I 0.983
SMU15029049 Schmidtea mediterranea SMU15029049 I 0.985
SMU15038222 Schmidtea mediterranea SMU15038222 I 0.985
SMUV_0000245701 Syphacia muris SMUV_0000245701 I 0.984
snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 I 0.926
SPAL_0001117000 Strongyloides papillosus SPAL_0001117000 I 0.986
SPU_014405 Strongylocentrotus purpuratus SPU_014405 I 0.984
SSTP_0000090600 Strongyloides stercoralis SSTP_0000090600 I 0.986
SVE_0933400 Strongyloides venezuelensis SVE_0933400 I 0.986
TC000441 Tribolium castaneum TC000441 I 0.753
TC009378 Tribolium castaneum TC009378 I 0.978
TCLT_0000456401 Thelazia callipaeda TCLT_0000456401 I 0.984
TCNE_0001716001 Toxocara canis TCNE_0001716001 I 0.986
TELCIR_21617 Teladorsagia circumcincta TELCIR_21617 I 0.825
tetur01g11040 Tetranychus urticae tetur01g11040 I 0.976
tetur08g01210 Tetranychus urticae tetur08g01210 I 0.750
TRE_0000223201 Trichobilharzia regenti TRE_0000223201 I 0.984
TTRE_0000600201 Trichuris trichiura TTRE_0000600201 I 0.978
fax-1 Caenorhabditis elegans WBGene00001400 I 0.986
WBGene00240517 Onchocerca volvulus WBGene00240517 I 0.986
WUBG_05086 Wuchereria bancrofti WUBG_05086 I 0.825
nr2e3 Xenopus tropicalis XB-GENE-485801 I 0.970