Cmyd_10012017 (Chelonia mydas)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Cmyd_10012017 T306627_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GA30480
M02409_2.00 		Drosophila pseudoobscura
RAGATCAM
KTGATCTY		 PBM
Weirauch et al.(2014)
pTH5877 		0.988 0.914
Hr51
M06432_2.00 		Drosophila melanogaster
AMRDATCARARGW
WCYTYTGATHYKT		 B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012 		0.988 0.914
NR2E3
M00373_2.00 		Homo sapiens
NRAGATCAMN
NKTGATCTYN		 PBM
Barrera et al.(2016)
NR2E3_REF 		0.977 0.914
Nr2e3
M02708_2.00 		Mus musculus
AAGCTTD
HAAGCTT		 SELEX
Mathelier et al.(2014)
MA0164.1 		0.977 0.914
Nr2e3
M09328_2.00 		Mus musculus
NAAGTCAAAARKCA
TGMYTTTTGACTTN		 Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C 		0.977 0.914
NR2E3
M00372_2.00 		Homo sapiens
AAAGATCA
TGATCTTT		 PBM
Barrera et al.(2016)
NR2E3_R77Q 		0.977 0.900
NR2E3
M00370_2.00 		Homo sapiens
NNNWRABATCANN
NNTGATVTYWNNN		 PBM
Barrera et al.(2016)
NR2E3_R76Q 		0.974 0.900
NR2E3
M00371_2.00 		Homo sapiens
NNNHAATWTRTNN
NNAYAWATTDNNN		 PBM
Barrera et al.(2016)
NR2E3_R76W 		0.969 0.900
NR2E3
M00369_2.00 		Homo sapiens
NGGGRTCAHN
NDTGAYCCCN		 PBM
Barrera et al.(2016)
NR2E3_G56R 		0.964 0.900
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10012017 Nuclear receptor 33 103

Links

Other Nuclear receptor family TFs
Other Chelonia mydas TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGI_10007932 Crassostrea gigas CGI_10007932 I 0.989
NR2E3 Anolis carolinensis ENSACAG00000011910 I 0.989
NR2E3 Gasterosteus aculeatus ENSGACG00000017060 I 0.989
ENSGMOG00000019194 Gadus morhua ENSGMOG00000019194 I 0.989
ENSLACG00000022378 Latimeria chalumnae ENSLACG00000022378 I 0.989
ENSLOCG00000014973 Lepisosteus oculatus ENSLOCG00000014973 I 0.989
ENSONIG00000007109 Oreochromis niloticus ENSONIG00000007109 I 0.989
NR2E3 Oryzias latipes ENSORLG00000000011 I 0.989
ENSPFOG00000006106 Poecilia formosa ENSPFOG00000006106 I 0.989
NR2E3 Takifugu rubripes ENSTRUG00000015582 I 0.989
ENSXMAG00000010311 Xiphophorus maculatus ENSXMAG00000010311 I 0.989
LotgiG137595 Lottia gigantea LotgiG137595 I 0.989
Alligator_sinensis_CCG020979.1 Alligator sinensis Alligator_sinensis_CCG020979.1 I 0.989
Ogr12843 Ophisaurus gracilis Ogr12843 I 0.989
Pvit_13689 Pogona vitticeps Pvit_13689 I 0.989
AAEL007190 Aedes aegypti AAEL007190 I 0.988
ACYPI007601 Acyrthosiphon pisum ACYPI007601 I 0.988
ADAC006988 Anopheles darlingi ADAC006988 I 0.988
ENSAMXG00000017872 Astyanax mexicanus ENSAMXG00000017872 I 0.988
nr2e3 Danio rerio ENSDARG00000045904 I 0.988
Hr51 Drosophila melanogaster FBgn0034012 D 0.988
GF13031 Drosophila ananassae FBgn0090064 I 0.988
GH20426 Drosophila grimshawi FBgn0127889 I 0.988
GI19610 Drosophila mojavensis FBgn0142347 I 0.988
GL17752 Drosophila persimilis FBgn0155355 I 0.988
GD11109 Drosophila simulans FBgn0182865 I 0.988
GJ14974 Drosophila virilis FBgn0202177 I 0.988
GK20892 Drosophila willistoni FBgn0222886 I 0.988
GE13645 Drosophila yakuba FBgn0231304 I 0.988
GA30480 Drosophila pseudoobscura FBgn0264774 D 0.988
GB49738 Apis mellifera GB49738 I 0.988
HelroG139475 Helobdella robusta HelroG139475 I 0.988
NV14480 Nasonia vitripennis NV14480 I 0.988
PHUM039420 Pediculus humanus PHUM039420 I 0.988
RPRC002557 Rhodnius prolixus RPRC002557 I 0.988
TC009378 Tribolium castaneum TC009378 I 0.988
Hsal_07902--XP_396999.3_APIME Harpegnathos saltator Hsal_07902--XP_396999.3_APIME I 0.988
e_gw.107.44.1 Branchiostoma floridae e_gw.107.44.1 I 0.988
e_gw.324.28.1 Branchiostoma floridae e_gw.324.28.1 I 0.988
LDEC022044 Leptinotarsa decemlineata LDEC022044 I 0.988
AALB001133 Anopheles albimanus AALB001133 I 0.988
AARA003887 Anopheles arabiensis AARA003887 I 0.988
AATE003142 Anopheles atroparvus AATE003142 I 0.988
ACOM026748 Anopheles coluzzii ACOM026748 I 0.988
AEPI011067 Anopheles epiroticus AEPI011067 I 0.988
AFAF011447 Anopheles farauti AFAF011447 I 0.988
AMEM000983 Anopheles merus AMEM000983 I 0.988
MDOA010244 Musca domestica MDOA010244 I 0.988
ENSFALG00000009699 Ficedula albicollis ENSFALG00000009699 I 0.987
NR2E3 Gallus gallus ENSGALG00000002093 I 0.987
ENSTGUG00000004498 Taeniopygia guttata ENSTGUG00000004498 I 0.987
L798_02234 Zootermopsis nevadensis L798_02234 I 0.987
Aan_R004022 Calypte anna Aan_R004022 I 0.987
Afo_R007066 Aptenodytes forsteri Afo_R007066 I 0.987
Gfo_R008863 Geospiza fortis Gfo_R008863 I 0.987
BGLB004019 Biomphalaria glabrata BGLB004019 I 0.987
CapteG171557 Capitella teleta CapteG171557 I 0.986
tetur01g11040 Tetranychus urticae tetur01g11040 I 0.986
DAPPUDRAFT_106791 Daphnia pulex DAPPUDRAFT_106791 I 0.982
nr2e3 Oryzias latipes ENSORLG00000007175 I 0.982
ENSPFOG00000006516 Poecilia formosa ENSPFOG00000006516 I 0.982
ENSXMAG00000015842 Xiphophorus maculatus ENSXMAG00000015842 I 0.982
Bm4485 Brugia malayi Bm4485 I 0.980
CBG14155 Caenorhabditis briggsae CBG14155 I 0.980
CBN22518 Caenorhabditis brenneri CBN22518 I 0.980
CJA07370 Caenorhabditis japonica CJA07370 I 0.980
CRE00427 Caenorhabditis remanei CRE00427 I 0.980
ENSMEUG00000016597 Macropus eugenii ENSMEUG00000016597 I 0.980
NR2E3 Monodelphis domestica ENSMODG00000001949 I 0.980
LOAG_06205 Loa loa LOAG_06205 I 0.980
fax-1 Caenorhabditis elegans WBGene00001400 I 0.980
WBGene00240517 Onchocerca volvulus WBGene00240517 I 0.980
SMU15029049 Schmidtea mediterranea SMU15029049 I 0.980
SMU15038222 Schmidtea mediterranea SMU15038222 I 0.980
nr2e3 Xenopus tropicalis XB-GENE-485801 I 0.980
ANCCAN_05510 Ancylostoma caninum ANCCAN_05510 I 0.980
ANCCEY_01724 Ancylostoma ceylanicum ANCCEY_01724 I 0.980
ASU_07884 Ascaris suum ASU_07884 I 0.980
BTMF_0001091401 Brugia timori BTMF_0001091401 I 0.980
BXY_0327700 Bursaphelenchus xylophilus BXY_0327700 I 0.980
CGOC_0000187501 Cylicostephanus goldi CGOC_0000187501 I 0.980
DICVIV_11193 Dictyocaulus viviparus DICVIV_11193 I 0.980
ECPE_0000243601 Echinostoma caproni ECPE_0000243601 I 0.980
Hba_15323 Heterorhabditis bacteriophora Hba_15323 I 0.980
HCOI01781300 Haemonchus contortus HCOI01781300 I 0.980
nLs.2.1.2.g01701 Litomosoides sigmodontis nLs.2.1.2.g01701 I 0.980
nOo.2.0.1.g01040 Onchocerca ochengi nOo.2.0.1.g01040 I 0.980
nOo.2.0.1.g10097 Onchocerca ochengi nOo.2.0.1.g10097 I 0.980
nOo.2.0.1.g11611 Onchocerca ochengi nOo.2.0.1.g11611 I 0.980
OFLC_0000991001 Onchocerca flexuosa OFLC_0000991001 I 0.980
SPAL_0001117000 Strongyloides papillosus SPAL_0001117000 I 0.980
SSTP_0000090600 Strongyloides stercoralis SSTP_0000090600 I 0.980
SVE_0933400 Strongyloides venezuelensis SVE_0933400 I 0.980
TCNE_0001716001 Toxocara canis TCNE_0001716001 I 0.980
EFV56045 Trichinella spiralis EFV56045 I 0.978
Ppa-fax-1 Pristionchus pacificus PPA00264 I 0.978
SPU_014405 Strongylocentrotus purpuratus SPU_014405 I 0.978
Sakowv30007027m.g Saccoglossus kowalevskii Sakowv30007027m.g I 0.978
D917_05007 Trichinella nativa D917_05007 I 0.978
genemark-nMf.1.1.scaf00188-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00188-processed-gene-0.4 I 0.978
GPLIN_000669800 Globodera pallida GPLIN_000669800 I 0.978
L596_g2163 Steinernema carpocapsae L596_g2163 I 0.978
L889_g11978 Steinernema feltiae L889_g11978 I 0.978
L892_g9366 Steinernema scapterisci L892_g9366 I 0.978
L893_g28297 Steinernema glaseri L893_g28297 I 0.978
L898_g15355 Steinernema monticolum L898_g15355 I 0.978
MhA1_Contig1792.frz3.gene6 Meloidogyne hapla MhA1_Contig1792.frz3.gene6 I 0.978
nAv.1.0.1.g01891 Acanthocheilonema viteae nAv.1.0.1.g01891 I 0.978
nDi.2.2.2.g10236 Dirofilaria immitis nDi.2.2.2.g10236 I 0.978
PTRK_0000446300 Parastrongyloides trichosuri PTRK_0000446300 I 0.978
RSKR_0000698500 Rhabditophanes kr3021 RSKR_0000698500 I 0.978
scaffold296-EXSNAP2012.8 Pristionchus exspectatus scaffold296-EXSNAP2012.8 I 0.978
TCLT_0000456401 Thelazia callipaeda TCLT_0000456401 I 0.978
TRE_0000223201 Trichobilharzia regenti TRE_0000223201 I 0.978
NR2E3 Bos taurus ENSBTAG00000014236 I 0.977
NR2E3 Callithrix jacchus ENSCJAG00000018552 I 0.977
NR2E3 Cavia porcellus ENSCPOG00000008974 I 0.977
ENSCSAG00000013721 Chlorocebus sabaeus ENSCSAG00000013721 I 0.977
NR2E3 Equus caballus ENSECAG00000015192 I 0.977
NR2E3 Felis catus ENSFCAG00000031082 I 0.977
NR2E3 Homo sapiens ENSG00000278570 D 0.977
NR2E3 Gorilla gorilla ENSGGOG00000004383 I 0.977
NR2E3 Myotis lucifugus ENSMLUG00000008408 I 0.977
NR2E3 Macaca mulatta ENSMMUG00000019276 I 0.977
ENSMPUG00000017103 Mustela putorius furo ENSMPUG00000017103 I 0.977
Nr2e3 Mus musculus ENSMUSG00000032292 D 0.977
ENSNLEG00000013807 Nomascus leucogenys ENSNLEG00000013807 I 0.977
ENSOARG00000018808 Ovis aries ENSOARG00000018808 I 0.977
NR2E3 Otolemur garnettii ENSOGAG00000006128 I 0.977
NR2E3 Ochotona princeps ENSOPRG00000006427 I 0.977
ENSPANG00000016257 Papio anubis ENSPANG00000016257 I 0.977
NR2E3 Procavia capensis ENSPCAG00000014733 I 0.977
NR2E3 Pan troglodytes ENSPTRG00000007242 I 0.977
NR2E3 Pteropus vampyrus ENSPVAG00000009088 I 0.977
Nr2e3 Rattus norvegicus ENSRNOG00000050690 I 0.977
ENSSTOG00000012080 Ictidomys tridecemlineatus ENSSTOG00000012080 I 0.977
NR2E3 Tursiops truncatus ENSTTRG00000009410 I 0.977
Smp_167770 Schistosoma mansoni Smp_167770 I 0.977
ENSBTAP00000048604-D1 Bos grunniens ENSBTAP00000048604-D1 I 0.977
Myotis_brandtii_NR2E3_10027281 Myotis brandtii Myotis_brandtii_NR2E3_10027281 I 0.977
csin100859 Clonorchis sinensis csin100859 I 0.977
SBAD_0000006401 Soboliphyme baturini SBAD_0000006401 I 0.977
SMRZ_0000841101 Schistosoma margrebowiei SMRZ_0000841101 I 0.977
SMTD_0001566201 Schistosoma mattheei SMTD_0001566201 I 0.977
ENSONIG00000015396 Oreochromis niloticus ENSONIG00000015396 I 0.976
NR2E3 Sus scrofa ENSSSCG00000004978 I 0.976
D918_07443 Trichuris suis D918_07443 I 0.976
TTRE_0000600201 Trichuris trichiura TTRE_0000600201 I 0.976
ENSPMAG00000009792 Petromyzon marinus ENSPMAG00000009792 I 0.975
nr2e3 Gasterosteus aculeatus ENSGACG00000004739 I 0.974
NR2E3 Tupaia belangeri ENSTBEG00000011672 I 0.974
SMUV_0000245701 Syphacia muris SMUV_0000245701 I 0.973
ENSGMOG00000008342 Gadus morhua ENSGMOG00000008342 I 0.972
NR2E3 Tetraodon nigroviridis ENSTNIG00000005150 I 0.972
EVEC_0000564801 Enterobius vermicularis EVEC_0000564801 I 0.971
SMAR005628 Strigamia maritima SMAR005628 I 0.955
ENSAMEG00000008835 Ailuropoda melanoleuca ENSAMEG00000008835 I 0.948
snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 I 0.930
NR2E3 Meleagris gallopavo ENSMGAG00000001449 I 0.848
WUBG_05086 Wuchereria bancrofti WUBG_05086 I 0.836
TELCIR_21617 Teladorsagia circumcincta TELCIR_21617 I 0.836
OESDEN_00114 Oesophagostomum dentatum OESDEN_00114 I 0.826
CLEC025263 Cimex lectularius CLEC025263 I 0.809
ISCW019467 Ixodes scapularis ISCW019467 I 0.804
Ppa-nhr-3 Pristionchus pacificus PPA28597 I 0.801
scaffold395-EXSNAP2012.23 Pristionchus exspectatus scaffold395-EXSNAP2012.23 I 0.801
SMAR006008 Strigamia maritima SMAR006008 I 0.785
BXY_0039800 Bursaphelenchus xylophilus BXY_0039800 I 0.777
PHUM331460 Pediculus humanus PHUM331460 I 0.769
SMUV_0000230901 Syphacia muris SMUV_0000230901 I 0.769
tetur08g01210 Tetranychus urticae tetur08g01210 I 0.768
HHAL007294-PA Halyomorpha halys HHAL007294-PA I 0.765
ISCW010891 Ixodes scapularis ISCW010891 I 0.764
RPRC007025 Rhodnius prolixus RPRC007025 I 0.757
CGI_10028920 Crassostrea gigas CGI_10028920 I 0.756
LotgiG130367 Lottia gigantea LotgiG130367 I 0.756
CpipJ_CPIJ017334 Culex pipiens CpipJ_CPIJ017334 I 0.755
CPIJ017334 Culex quinquefasciatus CPIJ017334 I 0.755
KGM_05606 Danaus plexippus KGM_05606 I 0.755
SINV22628 Solenopsis invicta SINV22628 I 0.755
LCUP008516 Lucilia cuprina LCUP008516 I 0.755
ADIR004737 Anopheles dirus ADIR004737 I 0.755
AMIN006845 Anopheles minimus AMIN006845 I 0.755
AQUA005692 Anopheles quadriannulatus AQUA005692 I 0.755
ASTEI11644 Anopheles stephensi ASTEI11644 I 0.755
ASTEI11696 Anopheles stephensi ASTEI11696 I 0.755
LLOJ002531 Lutzomyia longipalpis LLOJ002531 I 0.755
EFV59616 Trichinella spiralis EFV59616 I 0.753
ALUE_0000009401 Ascaris lumbricoides ALUE_0000009401 I 0.753
D917_09121 Trichinella nativa D917_09121 I 0.753
DAPPUDRAFT_299738 Daphnia pulex DAPPUDRAFT_299738 I 0.749
NR2E3 Loxodonta africana ENSLAFG00000021987 I 0.747
BGIBMGA002000 Bombyx mori BGIBMGA002000 I 0.746
HMEL012854 Heliconius melpomene HMEL012854 I 0.746
KGM_21528 Danaus plexippus KGM_21528 I 0.746
SMU15015045 Schmidtea mediterranea SMU15015045 I 0.745