CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nr2e3
(
Danio rerio
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSDARG00000045904
T302891_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GA30480
M02409_2.00
Drosophila pseudoobscura
RAGATCAM
KTGATCTY
PBM
Weirauch et al.(2014)
pTH5877
0.988
0.886
Hr51
M06432_2.00
Drosophila melanogaster
AMRDATCARARGW
WCYTYTGATHYKT
B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012
0.988
0.886
NR2E3
M00373_2.00
Homo sapiens
NRAGATCAMN
NKTGATCTYN
PBM
Barrera et al.(2016)
NR2E3_REF
0.977
0.900
Nr2e3
M02708_2.00
Mus musculus
AAGCTTD
HAAGCTT
SELEX
Mathelier et al.(2014)
MA0164.1
0.977
0.900
Nr2e3
M09328_2.00
Mus musculus
NAAGTCAAAARKCA
TGMYTTTTGACTTN
Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C
0.977
0.900
NR2E3
M00372_2.00
Homo sapiens
AAAGATCA
TGATCTTT
PBM
Barrera et al.(2016)
NR2E3_R77Q
0.977
0.886
NR2E3
M00370_2.00
Homo sapiens
NNNWRABATCANN
NNTGATVTYWNNN
PBM
Barrera et al.(2016)
NR2E3_R76Q
0.973
0.886
NR2E3
M00371_2.00
Homo sapiens
NNNHAATWTRTNN
NNAYAWATTDNNN
PBM
Barrera et al.(2016)
NR2E3_R76W
0.969
0.886
NR2E3
M00369_2.00
Homo sapiens
NGGGRTCAHN
NDTGAYCCCN
PBM
Barrera et al.(2016)
NR2E3_G56R
0.963
0.886
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000111061
Nuclear receptor
44
114
LLCKVCSDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNK
Links
Other
Nuclear receptor
family TFs
Other
Danio rerio
TFs
196 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL007190
Aedes aegypti
AAEL007190
I
0.988
ACYPI007601
Acyrthosiphon pisum
ACYPI007601
I
0.988
ADAC006988
Anopheles darlingi
ADAC006988
I
0.988
CGI_10007932
Crassostrea gigas
CGI_10007932
I
0.988
NR2E3
Anolis carolinensis
ENSACAG00000011910
I
0.988
ENSAMXG00000017872
Astyanax mexicanus
ENSAMXG00000017872
I
0.988
NR2E3
Gasterosteus aculeatus
ENSGACG00000017060
I
0.988
ENSGMOG00000019194
Gadus morhua
ENSGMOG00000019194
I
0.988
ENSLACG00000022378
Latimeria chalumnae
ENSLACG00000022378
I
0.988
ENSLOCG00000014973
Lepisosteus oculatus
ENSLOCG00000014973
I
0.988
ENSONIG00000007109
Oreochromis niloticus
ENSONIG00000007109
I
0.988
NR2E3
Oryzias latipes
ENSORLG00000000011
I
0.988
ENSPFOG00000006106
Poecilia formosa
ENSPFOG00000006106
I
0.988
NR2E3
Takifugu rubripes
ENSTRUG00000015582
I
0.988
ENSXMAG00000010311
Xiphophorus maculatus
ENSXMAG00000010311
I
0.988
Hr51
Drosophila melanogaster
FBgn0034012
D
0.988
GF13031
Drosophila ananassae
FBgn0090064
I
0.988
GH20426
Drosophila grimshawi
FBgn0127889
I
0.988
GI19610
Drosophila mojavensis
FBgn0142347
I
0.988
GL17752
Drosophila persimilis
FBgn0155355
I
0.988
GD11109
Drosophila simulans
FBgn0182865
I
0.988
GJ14974
Drosophila virilis
FBgn0202177
I
0.988
GK20892
Drosophila willistoni
FBgn0222886
I
0.988
GE13645
Drosophila yakuba
FBgn0231304
I
0.988
GA30480
Drosophila pseudoobscura
FBgn0264774
D
0.988
GB49738
Apis mellifera
GB49738
I
0.988
LotgiG137595
Lottia gigantea
LotgiG137595
I
0.988
NV14480
Nasonia vitripennis
NV14480
I
0.988
PHUM039420
Pediculus humanus
PHUM039420
I
0.988
RPRC002557
Rhodnius prolixus
RPRC002557
I
0.988
TC009378
Tribolium castaneum
TC009378
I
0.988
Alligator_sinensis_CCG020979.1
Alligator sinensis
Alligator_sinensis_CCG020979.1
I
0.988
Cmyd_10012017
Chelonia mydas
Cmyd_10012017
I
0.988
Hsal_07902--XP_396999.3_APIME
Harpegnathos saltator
Hsal_07902--XP_396999.3_APIME
I
0.988
Ogr12843
Ophisaurus gracilis
Ogr12843
I
0.988
Pvit_13689
Pogona vitticeps
Pvit_13689
I
0.988
e_gw.107.44.1
Branchiostoma floridae
e_gw.107.44.1
I
0.988
e_gw.324.28.1
Branchiostoma floridae
e_gw.324.28.1
I
0.988
LDEC022044
Leptinotarsa decemlineata
LDEC022044
I
0.988
AALB001133
Anopheles albimanus
AALB001133
I
0.988
AARA003887
Anopheles arabiensis
AARA003887
I
0.988
AATE003142
Anopheles atroparvus
AATE003142
I
0.988
ACOM026748
Anopheles coluzzii
ACOM026748
I
0.988
AEPI011067
Anopheles epiroticus
AEPI011067
I
0.988
AFAF011447
Anopheles farauti
AFAF011447
I
0.988
AMEM000983
Anopheles merus
AMEM000983
I
0.988
MDOA010244
Musca domestica
MDOA010244
I
0.988
HelroG139475
Helobdella robusta
HelroG139475
I
0.987
L798_02234
Zootermopsis nevadensis
L798_02234
I
0.987
ENSFALG00000009699
Ficedula albicollis
ENSFALG00000009699
I
0.986
NR2E3
Gallus gallus
ENSGALG00000002093
I
0.986
ENSTGUG00000004498
Taeniopygia guttata
ENSTGUG00000004498
I
0.986
Aan_R004022
Calypte anna
Aan_R004022
I
0.986
Afo_R007066
Aptenodytes forsteri
Afo_R007066
I
0.986
Gfo_R008863
Geospiza fortis
Gfo_R008863
I
0.986
BGLB004019
Biomphalaria glabrata
BGLB004019
I
0.986
CapteG171557
Capitella teleta
CapteG171557
I
0.985
tetur01g11040
Tetranychus urticae
tetur01g11040
I
0.985
nr2e3
Oryzias latipes
ENSORLG00000007175
I
0.982
ENSPFOG00000006516
Poecilia formosa
ENSPFOG00000006516
I
0.982
ENSXMAG00000015842
Xiphophorus maculatus
ENSXMAG00000015842
I
0.982
DAPPUDRAFT_106791
Daphnia pulex
DAPPUDRAFT_106791
I
0.981
Bm4485
Brugia malayi
Bm4485
I
0.980
CBG14155
Caenorhabditis briggsae
CBG14155
I
0.980
CBN22518
Caenorhabditis brenneri
CBN22518
I
0.980
CJA07370
Caenorhabditis japonica
CJA07370
I
0.980
CRE00427
Caenorhabditis remanei
CRE00427
I
0.980
ENSMEUG00000016597
Macropus eugenii
ENSMEUG00000016597
I
0.980
NR2E3
Monodelphis domestica
ENSMODG00000001949
I
0.980
LOAG_06205
Loa loa
LOAG_06205
I
0.980
fax-1
Caenorhabditis elegans
WBGene00001400
I
0.980
WBGene00240517
Onchocerca volvulus
WBGene00240517
I
0.980
ANCCAN_05510
Ancylostoma caninum
ANCCAN_05510
I
0.980
ANCCEY_01724
Ancylostoma ceylanicum
ANCCEY_01724
I
0.980
ASU_07884
Ascaris suum
ASU_07884
I
0.980
BTMF_0001091401
Brugia timori
BTMF_0001091401
I
0.980
BXY_0327700
Bursaphelenchus xylophilus
BXY_0327700
I
0.980
CGOC_0000187501
Cylicostephanus goldi
CGOC_0000187501
I
0.980
DICVIV_11193
Dictyocaulus viviparus
DICVIV_11193
I
0.980
ECPE_0000243601
Echinostoma caproni
ECPE_0000243601
I
0.980
Hba_15323
Heterorhabditis bacteriophora
Hba_15323
I
0.980
HCOI01781300
Haemonchus contortus
HCOI01781300
I
0.980
nLs.2.1.2.g01701
Litomosoides sigmodontis
nLs.2.1.2.g01701
I
0.980
nOo.2.0.1.g01040
Onchocerca ochengi
nOo.2.0.1.g01040
I
0.980
nOo.2.0.1.g10097
Onchocerca ochengi
nOo.2.0.1.g10097
I
0.980
nOo.2.0.1.g11611
Onchocerca ochengi
nOo.2.0.1.g11611
I
0.980
OFLC_0000991001
Onchocerca flexuosa
OFLC_0000991001
I
0.980
SPAL_0001117000
Strongyloides papillosus
SPAL_0001117000
I
0.980
SSTP_0000090600
Strongyloides stercoralis
SSTP_0000090600
I
0.980
SVE_0933400
Strongyloides venezuelensis
SVE_0933400
I
0.980
TCNE_0001716001
Toxocara canis
TCNE_0001716001
I
0.980
SMU15029049
Schmidtea mediterranea
SMU15029049
I
0.979
SMU15038222
Schmidtea mediterranea
SMU15038222
I
0.979
nr2e3
Xenopus tropicalis
XB-GENE-485801
I
0.979
EFV56045
Trichinella spiralis
EFV56045
I
0.978
D917_05007
Trichinella nativa
D917_05007
I
0.978
GPLIN_000669800
Globodera pallida
GPLIN_000669800
I
0.978
L596_g2163
Steinernema carpocapsae
L596_g2163
I
0.978
L889_g11978
Steinernema feltiae
L889_g11978
I
0.978
L892_g9366
Steinernema scapterisci
L892_g9366
I
0.978
L893_g28297
Steinernema glaseri
L893_g28297
I
0.978
L898_g15355
Steinernema monticolum
L898_g15355
I
0.978
RSKR_0000698500
Rhabditophanes kr3021
RSKR_0000698500
I
0.978
NR2E3
Bos taurus
ENSBTAG00000014236
I
0.977
NR2E3
Callithrix jacchus
ENSCJAG00000018552
I
0.977
NR2E3
Cavia porcellus
ENSCPOG00000008974
I
0.977
ENSCSAG00000013721
Chlorocebus sabaeus
ENSCSAG00000013721
I
0.977
NR2E3
Equus caballus
ENSECAG00000015192
I
0.977
NR2E3
Felis catus
ENSFCAG00000031082
I
0.977
NR2E3
Homo sapiens
ENSG00000278570
D
0.977
NR2E3
Gorilla gorilla
ENSGGOG00000004383
I
0.977
NR2E3
Myotis lucifugus
ENSMLUG00000008408
I
0.977
NR2E3
Macaca mulatta
ENSMMUG00000019276
I
0.977
ENSMPUG00000017103
Mustela putorius furo
ENSMPUG00000017103
I
0.977
Nr2e3
Mus musculus
ENSMUSG00000032292
D
0.977
ENSNLEG00000013807
Nomascus leucogenys
ENSNLEG00000013807
I
0.977
ENSOARG00000018808
Ovis aries
ENSOARG00000018808
I
0.977
NR2E3
Otolemur garnettii
ENSOGAG00000006128
I
0.977
NR2E3
Ochotona princeps
ENSOPRG00000006427
I
0.977
ENSPANG00000016257
Papio anubis
ENSPANG00000016257
I
0.977
NR2E3
Procavia capensis
ENSPCAG00000014733
I
0.977
NR2E3
Pan troglodytes
ENSPTRG00000007242
I
0.977
NR2E3
Pteropus vampyrus
ENSPVAG00000009088
I
0.977
Nr2e3
Rattus norvegicus
ENSRNOG00000050690
I
0.977
ENSSTOG00000012080
Ictidomys tridecemlineatus
ENSSTOG00000012080
I
0.977
NR2E3
Tursiops truncatus
ENSTTRG00000009410
I
0.977
Ppa-fax-1
Pristionchus pacificus
PPA00264
I
0.977
SPU_014405
Strongylocentrotus purpuratus
SPU_014405
I
0.977
ENSBTAP00000048604-D1
Bos grunniens
ENSBTAP00000048604-D1
I
0.977
Myotis_brandtii_NR2E3_10027281
Myotis brandtii
Myotis_brandtii_NR2E3_10027281
I
0.977
Sakowv30007027m.g
Saccoglossus kowalevskii
Sakowv30007027m.g
I
0.977
genemark-nMf.1.1.scaf00188-processed-gene-0.4
Meloidogyne floridensis
genemark-nMf.1.1.scaf00188-processed-gene-0.4
I
0.977
MhA1_Contig1792.frz3.gene6
Meloidogyne hapla
MhA1_Contig1792.frz3.gene6
I
0.977
nAv.1.0.1.g01891
Acanthocheilonema viteae
nAv.1.0.1.g01891
I
0.977
nDi.2.2.2.g10236
Dirofilaria immitis
nDi.2.2.2.g10236
I
0.977
PTRK_0000446300
Parastrongyloides trichosuri
PTRK_0000446300
I
0.977
SBAD_0000006401
Soboliphyme baturini
SBAD_0000006401
I
0.977
scaffold296-EXSNAP2012.8
Pristionchus exspectatus
scaffold296-EXSNAP2012.8
I
0.977
TCLT_0000456401
Thelazia callipaeda
TCLT_0000456401
I
0.977
TRE_0000223201
Trichobilharzia regenti
TRE_0000223201
I
0.977
ENSONIG00000015396
Oreochromis niloticus
ENSONIG00000015396
I
0.976
Smp_167770
Schistosoma mansoni
Smp_167770
I
0.976
csin100859
Clonorchis sinensis
csin100859
I
0.976
SMRZ_0000841101
Schistosoma margrebowiei
SMRZ_0000841101
I
0.976
SMTD_0001566201
Schistosoma mattheei
SMTD_0001566201
I
0.976
ENSPMAG00000009792
Petromyzon marinus
ENSPMAG00000009792
I
0.975
NR2E3
Sus scrofa
ENSSSCG00000004978
I
0.975
D918_07443
Trichuris suis
D918_07443
I
0.975
TTRE_0000600201
Trichuris trichiura
TTRE_0000600201
I
0.975
nr2e3
Gasterosteus aculeatus
ENSGACG00000004739
I
0.974
NR2E3
Tupaia belangeri
ENSTBEG00000011672
I
0.974
SMUV_0000245701
Syphacia muris
SMUV_0000245701
I
0.973
ENSGMOG00000008342
Gadus morhua
ENSGMOG00000008342
I
0.972
NR2E3
Tetraodon nigroviridis
ENSTNIG00000005150
I
0.971
EVEC_0000564801
Enterobius vermicularis
EVEC_0000564801
I
0.970
SMAR005628
Strigamia maritima
SMAR005628
I
0.954
ENSAMEG00000008835
Ailuropoda melanoleuca
ENSAMEG00000008835
I
0.947
snap_masked-nMf.1.1.scaf29070-processed-gene-0.1
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf29070-processed-gene-0.1
I
0.930
NR2E3
Meleagris gallopavo
ENSMGAG00000001449
I
0.845
WUBG_05086
Wuchereria bancrofti
WUBG_05086
I
0.836
TELCIR_21617
Teladorsagia circumcincta
TELCIR_21617
I
0.836
OESDEN_00114
Oesophagostomum dentatum
OESDEN_00114
I
0.827
ISCW019467
Ixodes scapularis
ISCW019467
I
0.804
CLEC025263
Cimex lectularius
CLEC025263
I
0.804
Ppa-nhr-3
Pristionchus pacificus
PPA28597
I
0.803
scaffold395-EXSNAP2012.23
Pristionchus exspectatus
scaffold395-EXSNAP2012.23
I
0.803
SMAR006008
Strigamia maritima
SMAR006008
I
0.787
BXY_0039800
Bursaphelenchus xylophilus
BXY_0039800
I
0.778
PHUM331460
Pediculus humanus
PHUM331460
I
0.770
HHAL007294-PA
Halyomorpha halys
HHAL007294-PA
I
0.767
ISCW010891
Ixodes scapularis
ISCW010891
I
0.766
SMUV_0000230901
Syphacia muris
SMUV_0000230901
I
0.765
tetur08g01210
Tetranychus urticae
tetur08g01210
I
0.764
RPRC007025
Rhodnius prolixus
RPRC007025
I
0.759
CGI_10028920
Crassostrea gigas
CGI_10028920
I
0.758
LotgiG130367
Lottia gigantea
LotgiG130367
I
0.758
EFV59616
Trichinella spiralis
EFV59616
I
0.755
D917_09121
Trichinella nativa
D917_09121
I
0.755
ALUE_0000009401
Ascaris lumbricoides
ALUE_0000009401
I
0.753
DAPPUDRAFT_299738
Daphnia pulex
DAPPUDRAFT_299738
I
0.751
CpipJ_CPIJ017334
Culex pipiens
CpipJ_CPIJ017334
I
0.750
CPIJ017334
Culex quinquefasciatus
CPIJ017334
I
0.750
KGM_05606
Danaus plexippus
KGM_05606
I
0.750
SINV22628
Solenopsis invicta
SINV22628
I
0.750
LCUP008516
Lucilia cuprina
LCUP008516
I
0.750
ADIR004737
Anopheles dirus
ADIR004737
I
0.750
AMIN006845
Anopheles minimus
AMIN006845
I
0.750
AQUA005692
Anopheles quadriannulatus
AQUA005692
I
0.750
ASTEI11644
Anopheles stephensi
ASTEI11644
I
0.750
ASTEI11696
Anopheles stephensi
ASTEI11696
I
0.750
LLOJ002531
Lutzomyia longipalpis
LLOJ002531
I
0.750
NR2E3
Loxodonta africana
ENSLAFG00000021987
I
0.747
KGM_21528
Danaus plexippus
KGM_21528
I
0.747
SMU15015045
Schmidtea mediterranea
SMU15015045
I
0.747
BGIBMGA002000
Bombyx mori
BGIBMGA002000
I
0.746
HMEL012854
Heliconius melpomene
HMEL012854
I
0.746