CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

HelroG124549 *(Helobdella robusta)* Paired box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00292 (PAX)	IPR001523	HelroG124549	T311926_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
pax2b M02425_2.00	Danio rerio	HVNYSRNSCR	YGSNYSRNBD	PBM Weirauch et al.(2014) pTH8679	0.909	0.909
pax2 M02428_2.00	Xenopus tropicalis	NNNRNBCRNN	NNYGVNYNNN	PBM Weirauch et al.(2014) pTH8556	0.909	0.909
Pax5B M01301_2.00	Gallus gallus	NSNDTNNNN	NNNNAHNSN	PBM Lambert et al.(2019) pTH9781	0.901	0.901
PAX5 M03443_2.00	Homo sapiens	RNBYANYSAWSCGTRACN	NGTYACGSWTSRNTRVNY	SELEX Jolma et al.(2013) PAX5_1	0.901	0.901
PAX5 M08160_2.00	Homo sapiens	RDGCGTGACCNN	NNGGTCACGCHY	ChIP-seq Mathelier et al.(2014) MA0014.3	0.901	0.901
PAX5 M07995_2.00	Homo sapiens	BCAVYSRDSCRKRRC	GYYMYGSHYSRBTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5C20_HudsonAlpha	0.901	0.901
PAX5 M07996_2.00	Homo sapiens	BCASYSRDSCRTRAC	GTYAYGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5N19_HudsonAlpha	0.901	0.901
PAX5 M07997_2.00	Homo sapiens	CASYSRDSCRKRACN	NGTYMYGSHYSRSTG	ChIP-seq Gerstein et al.(2012) GM12891_PAX5C20_HudsonAlpha	0.901	0.901
PAX5 M07998_2.00	Homo sapiens	BCASYSRDSCGKRRC	GYYMCGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12892_PAX5C20_HudsonAlpha	0.901	0.901
PAX5 M08227_2.00	Homo sapiens	BCANYSRDGCGTRAM	KTYACGCHYSRNTGV	ChIP-seq Contrino et al.(2012) Mv108	0.901	0.901
PAX5 M08228_2.00	Homo sapiens	AGCGTGRCYG	CRGYCACGCT	ChIP-seq Contrino et al.(2012) Mv109	0.901	0.901
PAX5 M09341_2.00	Homo sapiens	SNVDGNKCARCVRAGCRDGAC	GTCHYGCTYBGYTGMNCHBNS	Misc Kulakovskiy et al.(2013) PAX5_HUMAN.H11MO.0.A	0.901	0.901
Pax5 M09342_2.00	Mus musculus	VDRNBCAVYVRDSCRKRRM	KYYMYGSHYBRBTGVNYHB	Misc Kulakovskiy et al.(2013) PAX5_MOUSE.H11MO.0.A	0.901	0.901
PAX5 M09622_2.00	Homo sapiens	BCASYSRDSCRTGRMN	NKYCAYGSHYSRSTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_1	0.901	0.901
PAX5 M09623_2.00	Homo sapiens	BCABNVRSCGTGAC	GTCACGSYBNVTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_2	0.901	0.901
PAX5 M11208_2.00	Homo sapiens	BCNNNRNKCANBGNWGNRKRGMSRSHNB	VNDSYSKCYMYNCWNCVNTGMNYNNNGV	Transfac Matys et al.(2006) V$PAX5_01	0.901	0.901
PAX5 M11209_2.00	Homo sapiens	VRHVDGDNDBBTNRAGCGKRACVRYNVH	DBNRYBGTYMCGCTYNAVVHNHCHBDYB	Transfac Matys et al.(2006) V$PAX5_02	0.901	0.901
PAX5 M11210_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_06	0.901	0.901
PAX5 M11211_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_07	0.901	0.901
PAX5 M11212_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_Q6	0.901	0.901
sv M01302_2.00	Drosophila melanogaster	NNNSCRBRDM	KHYVYGSNNN	PBM Lambert et al.(2019) pTH9773	0.884	0.884
sv M03949_2.00	Drosophila melanogaster	NBCRNYSAWGCGTGACS	SGTCACGCWTSRNYGVN	SELEX Nitta et al.(2015) sv_1	0.884	0.884
sv M06438_2.00	Drosophila melanogaster	RNYSRDSCGTRACNN	NNGTYACGSHYSRNY	B1H Zhu et al.(2011) sv_SOLEXA_5_FBgn0005561	0.884	0.884
PAX8 M05685_2.00	Homo sapiens	NRNBYRNYSRWGCGTGACSN	NSGTCACGCWYSRNYRVNYN	SELEX Yin et al.(2017) PAX8_FL_HT-SELEX	0.868	0.868
Pax8 M09624_2.00	Rattus norvegicus	BCAGBCADSCRKGVM	KBCMYGSHTGVCTGV	Misc Heinz et al.(2010) Thyroid-Pax8_GSE26938	0.868	0.868
PAX8 M11205_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_01	0.868	0.868
PAX8 M11206_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_B	0.868	0.868
PAX8 M05686_2.00	Homo sapiens	NRNBCRNTSAWSCGYGACNN	NNGTCRCGSWTSANYGVNYN	SELEX Yin et al.(2017) PAX8_FL_Methyl-HT-SELEX	0.868	0.868
egl-38 M02426_2.00	Caenorhabditis elegans	ACCGTGAYCAC	GTGRTCACGGT	PBM Weirauch et al.(2014) pTH8981	0.760	0.760
pax-2 M00706_2.00	Caenorhabditis elegans	RMSCRTRACS	SGTYAYGSKY	PBM Narasimhan et al.(2015) pTH10794	0.760	0.760
PAX1 M03442_2.00	Homo sapiens	DBCANTSAWGCGTGACS	SGTCACGCWTSANTGVH	SELEX Jolma et al.(2013) PAX1_1	0.744	0.744
PAX9 M03444_2.00	Homo sapiens	NKCANTSAWGCGTGACS	SGTCACGCWTSANTGMN	SELEX Jolma et al.(2013) PAX9_1	0.744	0.744
PAX1 M05687_2.00	Homo sapiens	BCRNTSRWGCGTGACSN	NSGTCACGCWYSANYGV	SELEX Yin et al.(2017) PAX1_eDBD_HT-SELEX	0.744	0.744
PAX9 M05689_2.00	Homo sapiens	BHRNYSRDSCGTRACSN	NSGTYACGSHYSRNYDV	SELEX Yin et al.(2017) PAX9_eDBD_HT-SELEX	0.744	0.744
PAX1 M11207_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX1_B	0.744	0.744
PAX1 M05688_2.00	Homo sapiens	BCRNTSAWGCGTGACSN	NSGTCACGCWTSANYGV	SELEX Yin et al.(2017) PAX1_eDBD_Methyl-HT-SELEX	0.744	0.744
PAX9 M05690_2.00	Homo sapiens	BCRNTSAWSCGYGACNN	NNGTCRCGSWTSANYGV	SELEX Yin et al.(2017) PAX9_eDBD_Methyl-HT-SELEX	0.744	0.744
PAX7 M00346_2.00	Homo sapiens	NGTYAYGSHN	NDSCRTRACN	PBM Barrera et al.(2016) PAX7_REF	0.736	0.736
Poxm M03944_2.00	Drosophila melanogaster	CAVTCAWGCGTGACR	YGTCACGCWTGABTG	SELEX Nitta et al.(2015) Poxm_1	0.736	0.736
Poxm M03945_2.00	Drosophila melanogaster	NYSAWGCRTRACS	SGTYAYGCWTSRN	SELEX Nitta et al.(2015) Poxm_2	0.736	0.736
Poxm M06436_2.00	Drosophila melanogaster	NNNNNNMVNHNRNSCRTGA	TCAYGSNYNDNBKNNNNNN	B1H Zhu et al.(2011) Poxm_SOLEXA_5_FBgn0003129	0.736	0.736
pax9 M11204_2.00	Danio rerio	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX9_B	0.736	0.736
Poxn M03946_2.00	Drosophila melanogaster	DGCGTGACSGTCACGSY	RSCGTGACSGTCACGCH	SELEX Nitta et al.(2015) Poxn_1	0.727	0.727
Poxn M03947_2.00	Drosophila melanogaster	RSCGKGACSGTTMCGSW	WSCGKAACSGTCMCGSY	SELEX Nitta et al.(2015) Poxn_2	0.727	0.727
Poxn M03948_2.00	Drosophila melanogaster	NCGTTCCGGAACGD	HCGTTCCGGAACGN	SELEX Nitta et al.(2015) Poxn_3	0.727	0.727
Poxn M06437_2.00	Drosophila melanogaster	RSCGTGACG	CGTCACGSY	B1H Zhu et al.(2011) Poxn_SOLEXA_5_FBgn0003130	0.727	0.727
PAX7 M00345_2.00	Homo sapiens	NSGTCACGSN	NSCGTGACSN	PBM Barrera et al.(2016) PAX7_P112L	0.727	0.727
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
HelroP124549	Paired box	1	121	HGGVNQLGGVFVNGRPLPDMVRQRIVEMAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDAICKYKRENATMFAWEIRDRLLAEGVCDQENVPSVSSINR

Links
Other Paired box family TFs
Other *Helobdella robusta* TFs

586 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
67303	Aureococcus anophagefferens	67303	N	0.000
Afo_R012670	Aptenodytes forsteri	Afo_R012670	N	0.000
ASIM_0000075001	Anisakis simplex	ASIM_0000075001	N	0.000
AWRI1499_3370	Brettanomyces bruxellensis	AWRI1499_3370	N	0.000
BN7_5034	Wickerhamomyces ciferrii	BN7_5034	N	0.000
Brh_R004116	Buceros rhinoceros	Brh_R004116	N	0.000
CaO19.9299	Candida albicans	CaO19.9299	N	0.000
CC1G_05598	Coprinopsis cinerea	CC1G_05598	N	0.000
CC1G_07924	Coprinopsis cinerea	CC1G_07924	N	0.000
CNM02020	Cryptococcus neoformans	CNM02020	N	0.000
DDB_G0287073	Dictyostelium discoideum	DDB_G0287073	N	0.000
DICVIV_04576	Dictyocaulus viviparus	DICVIV_04576	N	0.000
EFA85451.1	Polysphondylium pallidum	EFA85451.1	N	0.000
EMIHUDRAFT_107556	Emiliania huxleyi	EMIHUDRAFT_107556	N	0.000
EMIHUDRAFT_108701	Emiliania huxleyi	EMIHUDRAFT_108701	N	0.000
SOX12	Dasypus novemcinctus	ENSDNOG00000044763	N	0.000
SOX2	Felis catus	ENSFCAG00000029205	I	0.000
SOX2	Procavia capensis	ENSPCAG00000003690	I	0.000
estExt_fgenesh1_kg.C_77250001	Phytophthora capsici	estExt_fgenesh1_kg.C_77250001	N	0.000
fgenesh1_pg.C_chr_1000979	Mycosphaerella graminicola	fgenesh1_pg.C_chr_1000979	N	0.000
fgenesh1_pg.C_scaffold_11000031	Sporobolomyces roseus	fgenesh1_pg.C_scaffold_11000031	N	0.000
gene27768-v1.0-hybrid	Fragaria vesca	gene27768-v1.0-hybrid	N	0.000
GLOINDRAFT_193164	Rhizophagus irregularis	GLOINDRAFT_193164	N	0.000
GLOINDRAFT_25375	Rhizophagus irregularis	GLOINDRAFT_25375	N	0.000
GLOINDRAFT_346686	Rhizophagus irregularis	GLOINDRAFT_346686	N	0.000
GLOINDRAFT_83691	Rhizophagus irregularis	GLOINDRAFT_83691	N	0.000
GLOTRDRAFT_8101	Gloeophyllum trabeum	GLOTRDRAFT_8101	N	0.000
GLYMA20G01570	Glycine max	GLYMA20G01570	N	0.000
GPLIN_000970900	Globodera pallida	GPLIN_000970900	N	0.000
Hba_21281	Heterorhabditis bacteriophora	Hba_21281	N	0.000
K443DRAFT_58201	Laccaria amethystina	K443DRAFT_58201	N	0.000
LACBIDRAFT_169971	Laccaria bicolor	LACBIDRAFT_169971	N	0.000
MESCA012239	Megaselia scalaris	MESCA012239	I	0.000
Mycgr3G89562	Zymoseptoria tritici	Mycgr3G89562	N	0.000
OESDEN_23252	Oesophagostomum dentatum	OESDEN_23252	N	0.000
Ogr08337	Ophisaurus gracilis	Ogr08337	N	0.000
PLEOSDRAFT_1017219	Pleurotus ostreatus	PLEOSDRAFT_1017219	N	0.000
PPAI003639	Phlebotomus papatasi	PPAI003639	N	0.000
PredSwiss_ASS2010_4422.1	Pneumocystis carinii	PredSwiss_ASS2010_4422.1	N	0.000
PSEUBRA_SCAF2g02551	Pseudozyma brasiliensis	PSEUBRA_SCAF2g02551	N	0.000
PXEA_0002992801	Protopolystoma xenopodis	PXEA_0002992801	N	0.000
RPRC001038	Rhodnius prolixus	RPRC001038	N	0.000
SCLCIDRAFT_59496	Scleroderma citrinum	SCLCIDRAFT_59496	N	0.000
Sjc_0107520	Schistosoma japonicum	Sjc_0107520	N	0.000
SMU15030186	Schmidtea mediterranea	SMU15030186	N	0.000
WALSEDRAFT_59420	Wallemia sebi	WALSEDRAFT_59420	N	0.000
sox-2	Caenorhabditis elegans	WBGene00004949	I	0.000
YQE_08562	Dendroctonus ponderosae	YQE_08562	N	0.000

HelroG124549 (Helobdella robusta) Paired box

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

586 Related TFs

HelroG124549 **(Helobdella robusta)
Paired box**