Carubv10025429m.g (Capsella rubella)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Carubv10025429m.g T321492_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025429m S1FA 11 76

Links

Other S1FA family TFs
Other Capsella rubella TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28582.m000316 Ricinus communis 28582.m000316 N
28582.m000318 Ricinus communis 28582.m000318 N
30226.m001993 Ricinus communis 30226.m001993 N
AMTR_s00022p00190540 Amborella trichopoda AMTR_s00022p00190540 I
Aquca_009_00165 Aquilegia coerulea Aquca_009_00165 N
Aquca_012_00204 Aquilegia coerulea Aquca_012_00204 N
AT5G06800 Arabidopsis thaliana AT5G06800 N
Bo2g007410 Brassica oleracea Bo2g007410 N
Bo3g004040 Brassica oleracea Bo3g004040 N
Bo9g175820 Brassica oleracea Bo9g175820 I
Bostr.13129s0292 Boechera stricta Bostr.13129s0292 N
Bra005912 Brassica rapa Bra005912 N
Bra009228 Brassica rapa Bra009228 I
Bra028717 Brassica rapa Bra028717 N
Cagra.8005s0016 Capsella grandiflora Cagra.8005s0016 N
Carubv10003217m.g Capsella rubella Carubv10003217m.g N
cassava12253.valid.m1 Manihot esculenta cassava12253.valid.m1 N
cassava12254.valid.m1 Manihot esculenta cassava12254.valid.m1 N
cassava12255.valid.m1 Manihot esculenta cassava12255.valid.m1 N
cassava16780.m1 Manihot esculenta cassava16780.m1 I
cassava39743.m1 Manihot esculenta cassava39743.m1 N
Ca_07304 Cicer arietinum Ca_07304 I
Ca_14198 Cicer arietinum Ca_14198 N
chr1.LjT38A19.30.nc Lotus japonicus chr1.LjT38A19.30.nc N
chr5.LjT42I01.50.nd Lotus japonicus chr5.LjT42I01.50.nd I
Ciclev10012014m.g Citrus clementina Ciclev10012014m.g N
Ciclev10012556m.g Citrus clementina Ciclev10012556m.g N
Cla011853 Citrullus lanatus Cla011853 N
Cucsa.353890 Cucumis sativus Cucsa.353890 N
Eucgr.A02444 Eucalyptus grandis Eucgr.A02444 N
evm.TU.supercontig_85.82 Carica papaya evm.TU.supercontig_85.82 N
fgenesh2_kg.6__627__AT5G06800.1 Arabidopsis lyrata fgenesh2_kg.6__627__AT5G06800.1 N
gene22647-v1.0-hybrid Fragaria vesca gene22647-v1.0-hybrid N
GLYMA02G30800 Glycine max GLYMA02G30800 N
GLYMA03G29940 Glycine max GLYMA03G29940 I
GLYMA09G17404 Glycine max GLYMA09G17404 N
GLYMA19G32850 Glycine max GLYMA19G32850 I
Gorai.002G225400 Gossypium raimondii Gorai.002G225400 N
Gorai.006G142000 Gossypium raimondii Gorai.006G142000 N
GSMUA_Achr4G19300_001 Musa acuminata GSMUA_Achr4G19300_001 I
GSMUA_Achr7G06370_001 Musa acuminata GSMUA_Achr7G06370_001 I
Lus10021035.g Linum usitatissimum Lus10021035.g N
Lus10022886.g Linum usitatissimum Lus10022886.g I
Lus10023816.g Linum usitatissimum Lus10023816.g N
MDP0000184307 Malus domestica MDP0000184307 N
MDP0000253656 Malus domestica MDP0000253656 N
MDP0000280005 Malus domestica MDP0000280005 N
mgf007532m Mimulus guttatus mgf007532m N
mgf007985m Mimulus guttatus mgf007985m N
MTR_1g053835 Medicago truncatula MTR_1g053835 N
MTR_7g093030 Medicago truncatula MTR_7g093030 N
orange1.1g018583m.g Citrus sinensis orange1.1g018583m.g N
orange1.1g044722m.g Citrus sinensis orange1.1g044722m.g N
PDK_20s1301376g001 Phoenix dactylifera PDK_20s1301376g001 I
PGSC0003DMG400011435 Solanum tuberosum PGSC0003DMG400011435 N
PK00827.1 Cannabis sativa PK00827.1 N
Pm025973 Prunus mume Pm025973 N
POPTR_0006s20540 Populus trichocarpa POPTR_0006s20540 N
POPTR_0016s04830 Populus trichocarpa POPTR_0016s04830 N
PRUPE_ppa016067mg Prunus persica PRUPE_ppa016067mg N
SapurV1A.0018s0530 Salix purpurea SapurV1A.0018s0530 N
SapurV1A.0251s0040 Salix purpurea SapurV1A.0251s0040 N
Solyc10g078720.1 Solanum lycopersicum Solyc10g078720.1 N
TCM_024886 Theobroma cacao TCM_024886 N
Thhalv10013850m.g Eutrema salsugineum Thhalv10013850m.g N
VIT_08s0007g06180 Vitis vinifera VIT_08s0007g06180 I
VIT_08s0007g06310 Vitis vinifera VIT_08s0007g06310 I