MTR_3g090900 (Medicago truncatula)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 MTR_3g090900 T323880_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AES72449 Sigma 70 280 351
KEH35442 Sigma 70 280 351
KEH35443 Sigma 70 280 351

Links

Other Sigma 70 family TFs
Other Medicago truncatula TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30169.m006532 Ricinus communis 30169.m006532 N 0.884
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.826
SIGE Arabidopsis thaliana AT5G24120 N 0.797
Bo7g097160 Brassica oleracea Bo7g097160 N 0.729
Bo9g013770 Brassica oleracea Bo9g013770 N 0.797
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.812
Bra009735 Brassica rapa Bra009735 N 0.729
Bra026466 Brassica rapa Bra026466 N 0.797
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.812
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.812
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.870
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.913
Ca_03953 Cicer arietinum Ca_03953 N 0.913
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.884
Cla004302 Citrullus lanatus Cla004302 N 0.870
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.870
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.913
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.797
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.899
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.928
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.913
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.841
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.812
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.899
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.797
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.812
MDP0000831937 Malus domestica MDP0000831937 N 0.855
mgf001401m Mimulus guttatus mgf001401m N 0.812
mgf006107m Mimulus guttatus mgf006107m N 0.841
OB05G35020 Oryza brachyantha OB05G35020 N 0.710
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.884
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.710
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.870
PK06897.1 Cannabis sativa PK06897.1 N 0.855
Pm019782 Prunus mume Pm019782 N 0.826
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.855
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.870
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.841
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.855
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.855
Si021904m.g Setaria italica Si021904m.g N 0.710
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.855
TCM_015349 Theobroma cacao TCM_015349 N 0.913
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.797
SIGE Vitis vinifera VIT_16s0050g02520 N 0.870