Bra013731 (Brassica rapa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bra013731 T326703_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.524 0.751
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.524 0.751
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra013731.1-P Sox 141 209
Bra013731.1-P Sox 258 324
Bra013731.1-P Sox 382 450

Links

Other Sox family TFs
Other Brassica rapa TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BPC2 Arabidopsis thaliana AT1G14685 N 0.000
Bo5g019930 Brassica oleracea Bo5g019930 N 0.000
Bo8g066170 Brassica oleracea Bo8g066170 N 0.000
Bo8g106640 Brassica oleracea Bo8g106640 N 0.000
Bostr.0124s0194 Boechera stricta Bostr.0124s0194 N 0.000
Bra016686 Brassica rapa Bra016686 N 0.000
Bra026196 Brassica rapa Bra026196 N 0.000
Bra026813 Brassica rapa Bra026813 N 0.000
Cagra.3501s0027 Capsella grandiflora Cagra.3501s0027 N 0.000
Carubv10009978m.g Capsella rubella Carubv10009978m.g N 0.000
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 0.000
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 0.000
BPC2 Arabidopsis lyrata fgenesh2_kg.1__1602__AT1G14685.1 I 0.000
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.000
Thhalv10008428m.g Eutrema salsugineum Thhalv10008428m.g N 0.000
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.000