GLYMA17G14710 (Glycine max)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GLYMA17G14710 T330295_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.689 0.750
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.689 0.750
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.674 0.909
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.644 0.864
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.644 0.864
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.705
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA17G14710.1 Sox 131 174
GLYMA17G14710.2 Sox 73 116

Links

Other Sox family TFs
Other Glycine max TFs

522 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29693.m002039 Ricinus communis 29693.m002039 I
AGL29 Arabidopsis thaliana AT2G34440 I
AGL91 Arabidopsis thaliana AT3G66656 D
Bo3g060720 Brassica oleracea Bo3g060720 I
Bo4g182590 Brassica oleracea Bo4g182590 I
Bostr.22252s0371 Boechera stricta Bostr.22252s0371 I
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I
Bra001209 Brassica rapa Bra001209 I
Cagra.0133s0015 Capsella grandiflora Cagra.0133s0015 I
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I
Carubv10014761m.g Capsella rubella Carubv10014761m.g I
Carubv10025656m.g Capsella rubella Carubv10025656m.g I
cassava10519.m1 Manihot esculenta cassava10519.m1 I
Ca_05023 Cicer arietinum Ca_05023 I
Ca_24185 Cicer arietinum Ca_24185 I
chr3.CM0059.60.nd Lotus japonicus chr3.CM0059.60.nd N
chr4.LjT16L01.50.nd Lotus japonicus chr4.LjT16L01.50.nd I
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I
Cla019897 Citrullus lanatus Cla019897 N
Cucsa.212320 Cucumis sativus Cucsa.212320 N
Eucgr.D00311 Eucalyptus grandis Eucgr.D00311 N
Eucgr.D00312 Eucalyptus grandis Eucgr.D00312 N
Eucgr.D00313 Eucalyptus grandis Eucgr.D00313 N
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I
gene14058-v1.0-hybrid Fragaria vesca gene14058-v1.0-hybrid I
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I
GLYMA05G35811 Glycine max GLYMA05G35811 I
GLYMA05G35820 Glycine max GLYMA05G35820 I
GLYMA08G03830 Glycine max GLYMA08G03830 I
GLYMA18G20830 Glycine max GLYMA18G20830 I
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I
Lus10040832.g Linum usitatissimum Lus10040832.g N
MDP0000274606 Malus domestica MDP0000274606 N
MTR_1g047550 Medicago truncatula MTR_1g047550 I
MTR_1g054265 Medicago truncatula MTR_1g054265 I
MTR_1g063160 Medicago truncatula MTR_1g063160 I
MTR_4g131030 Medicago truncatula MTR_4g131030 I
MTR_8g051580 Medicago truncatula MTR_8g051580 I
MTR_8g079502 Medicago truncatula MTR_8g079502 I
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I
PDK_20s1551551g001 Phoenix dactylifera PDK_20s1551551g001 I
Pm030655 Prunus mume Pm030655 I
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I
SapurV1A.0560s0040 Salix purpurea SapurV1A.0560s0040 N
SapurV1A.2238s0010 Salix purpurea SapurV1A.2238s0010 N
TCM_029518 Theobroma cacao TCM_029518 I
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I