PGSC0003DMG400012298 (Solanum tuberosum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PGSC0003DMG400012298 T331848_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.461 0.678
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.461 0.678
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400032048 Sox 176 240
PGSC0003DMT400032048 Sox 293 360
PGSC0003DMT400032048 Sox 421 489
PGSC0003DMT400032049 Sox 176 240
PGSC0003DMT400032049 Sox 293 360
PGSC0003DMT400032049 Sox 421 462

Links

Other Sox family TFs
Other Solanum tuberosum TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G50680 Arabidopsis thaliana AT1G50680 I
AT1G51120 Arabidopsis thaliana AT1G51120 D
Bo5g081270 Brassica oleracea Bo5g081270 I
Bo6g022280 Brassica oleracea Bo6g022280 I
Bo6g022450 Brassica oleracea Bo6g022450 I
Bo6g022460 Brassica oleracea Bo6g022460 I
Bo6g024770 Brassica oleracea Bo6g024770 I
Bostr.26675s0076 Boechera stricta Bostr.26675s0076 I
Bostr.26675s0109 Boechera stricta Bostr.26675s0109 I
Bra018854 Brassica rapa Bra018854 I
Bra018869 Brassica rapa Bra018869 I
Bra030458 Brassica rapa Bra030458 I
Cagra.2093s0004 Capsella grandiflora Cagra.2093s0004 I
Carubv10011257m.g Capsella rubella Carubv10011257m.g I
Carubv10011592m.g Capsella rubella Carubv10011592m.g I
Cla004867 Citrullus lanatus Cla004867 I
Cucsa.142990 Cucumis sativus Cucsa.142990 I
fgenesh2_kg.1__4154__AT1G50680.1 Arabidopsis lyrata fgenesh2_kg.1__4154__AT1G50680.1 I
TCM_040397 Theobroma cacao TCM_040397 I
Thhalv10012152m.g Eutrema salsugineum Thhalv10012152m.g I
Thhalv10012161m.g Eutrema salsugineum Thhalv10012161m.g I
Thhalv10012356m.g Eutrema salsugineum Thhalv10012356m.g I
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I