Ppa-hmg-1.1 (Pristionchus pacificus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PPA22767 T332189_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PPA22767 Sox 18 82

Links

Other Sox family TFs
Other Pristionchus pacificus TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29693.m002035 Ricinus communis 29693.m002035 N
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N
AT2G34450 Arabidopsis thaliana AT2G34450 N
BGIOSGA004165 Oryza indica BGIOSGA004165 N
BGIOSGA004167 Oryza indica BGIOSGA004167 N
Bo4g182600 Brassica oleracea Bo4g182600 N
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N
Bra021911 Brassica rapa Bra021911 N
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N
Carubv10024236m.g Capsella rubella Carubv10024236m.g N
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N
Ca_05162 Cicer arietinum Ca_05162 N
Ca_05164 Cicer arietinum Ca_05164 N
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N
Cucsa.047620 Cucumis sativus Cucsa.047620 N
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N
F775_05073 Aegilops tauschii F775_05073 I
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N
GLYMA05G25892 Glycine max GLYMA05G25892 N
GLYMA05G25900 Glycine max GLYMA05G25900 N
GLYMA08G08840 Glycine max GLYMA08G08840 N
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N
GRMZM2G024247 Zea mays GRMZM2G024247 N
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N
LPERR01G21970 Leersia perrieri LPERR01G21970 N
Lus10015268.g Linum usitatissimum Lus10015268.g N
Lus10025391.g Linum usitatissimum Lus10025391.g N
MDP0000143506 Malus domestica MDP0000143506 N
MDP0000170945 Malus domestica MDP0000170945 N
MDP0000392251 Malus domestica MDP0000392251 N
MDP0000695104 Malus domestica MDP0000695104 N
mgf009922m Mimulus guttatus mgf009922m N
MLOC_7069 Hordeum vulgare MLOC_7069 N
MTR_4g094622 Medicago truncatula MTR_4g094622 N
OB01G34910 Oryza brachyantha OB01G34910 I
OBART01G25720 Oryza barthii OBART01G25720 N
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N
OMERI01G23390 Oryza meridionalis OMERI01G23390 N
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N
OS01G0666200 Oryza sativa OS01G0666200 N
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I
Pavir.J05892 Panicum virgatum Pavir.J05892 N
PK22924.1 Cannabis sativa PK22924.1 N
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N
Sb03g030540 Sorghum bicolor Sb03g030540 N
Si003021m.g Setaria italica Si003021m.g N
TCM_029514 Theobroma cacao TCM_029514 N
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I