cassava6449.valid.m1 (Manihot esculenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 cassava6449.valid.m1 T333945_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava6449.valid.m1 Sox 14 83

Links

Other Sox family TFs
Other Manihot esculenta TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.704
29693.m002035 Ricinus communis 29693.m002035 N 0.702
TCM_029514 Theobroma cacao TCM_029514 N 0.694
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.694
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.694
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.694
PK22924.1 Cannabis sativa PK22924.1 N 0.690
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.657
MDP0000143506 Malus domestica MDP0000143506 N 0.653
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.652
MDP0000695104 Malus domestica MDP0000695104 N 0.652
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.650
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.649
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.648
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.647
Bo4g182600 Brassica oleracea Bo4g182600 N 0.647
Bra021911 Brassica rapa Bra021911 N 0.647
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.645
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.639
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.637
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.634
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.628
Ca_05162 Cicer arietinum Ca_05162 N 0.626
Ca_05164 Cicer arietinum Ca_05164 N 0.626
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.623
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.623
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.621
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.616
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.615
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.615
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.615
F775_05073 Aegilops tauschii F775_05073 I 0.614
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.614
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.611
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.607
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.603
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.601
mgf009922m Mimulus guttatus mgf009922m N 0.600
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.586
Si003021m.g Setaria italica Si003021m.g N 0.581
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.561
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.556
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.549
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.515
OB01G34910 Oryza brachyantha OB01G34910 I 0.513
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.505
MDP0000170945 Malus domestica MDP0000170945 N 0.500
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.490
OBART01G25720 Oryza barthii OBART01G25720 N 0.490
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.490
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.490
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.490
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.490
OS01G0666200 Oryza sativa OS01G0666200 N 0.490
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.488
MDP0000392251 Malus domestica MDP0000392251 N 0.462
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.456
GLYMA05G25892 Glycine max GLYMA05G25892 N 0.444
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.431