Lus10025391.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10025391.g T334572_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10025391 Sox 86 155

Links

Other Sox family TFs
Other Linum usitatissimum TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.729
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.676
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.650
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.648
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.641
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.639
PK22924.1 Cannabis sativa PK22924.1 N 0.634
Bra021911 Brassica rapa Bra021911 N 0.632
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.632
Bo4g182600 Brassica oleracea Bo4g182600 N 0.632
29693.m002035 Ricinus communis 29693.m002035 N 0.630
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.630
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.630
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.630
TCM_029514 Theobroma cacao TCM_029514 N 0.630
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.614
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.609
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.607
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.607
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.607
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.606
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.601
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.601
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.600
F775_05073 Aegilops tauschii F775_05073 I 0.595
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.595
mgf009922m Mimulus guttatus mgf009922m N 0.595
Ca_05164 Cicer arietinum Ca_05164 N 0.591
Ca_05162 Cicer arietinum Ca_05162 N 0.591
MDP0000695104 Malus domestica MDP0000695104 N 0.590
MDP0000143506 Malus domestica MDP0000143506 N 0.588
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.584
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.583
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.581
Si003021m.g Setaria italica Si003021m.g N 0.574
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.573
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.568
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.559
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.556
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.555
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.545
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.542
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.542
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.499
OB01G34910 Oryza brachyantha OB01G34910 I 0.495
OBART01G25720 Oryza barthii OBART01G25720 N 0.477
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.477
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.477
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.477
OS01G0666200 Oryza sativa OS01G0666200 N 0.477
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.477
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.477
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.475
MDP0000170945 Malus domestica MDP0000170945 N 0.461
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.450
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.428
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.426
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.426
MDP0000392251 Malus domestica MDP0000392251 N 0.423
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.416