OB01G34910 (Oryza brachyantha)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OB01G34910 T331546_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.441 0.536
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB01G34910.1 Sox 49 118

Links

Other Sox family TFs
Other Oryza brachyantha TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.668
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.637
OBART01G25720 Oryza barthii OBART01G25720 N 0.637
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.637
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.637
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.637
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.637
OS01G0666200 Oryza sativa OS01G0666200 N 0.637
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.635
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.635
F775_05073 Aegilops tauschii F775_05073 I 0.634
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.634
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.623
Si003021m.g Setaria italica Si003021m.g N 0.590
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.564
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.559
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.558
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.558
29693.m002035 Ricinus communis 29693.m002035 N 0.552
MDP0000143506 Malus domestica MDP0000143506 N 0.548
TCM_029514 Theobroma cacao TCM_029514 N 0.544
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.544
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.544
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.544
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.540
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.540
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.539
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.539
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.537
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.535
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.535
MDP0000695104 Malus domestica MDP0000695104 N 0.535
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.535
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.528
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.525
Ca_05162 Cicer arietinum Ca_05162 N 0.523
Ca_05164 Cicer arietinum Ca_05164 N 0.523
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.513
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.512
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.512
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.511
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.508
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.507
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.506
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.504
HMGB5 Arabidopsis thaliana AT4G35570 I 0.501
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.495
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.494
mgf009922m Mimulus guttatus mgf009922m N 0.487
Ca_05351 Cicer arietinum Ca_05351 I 0.484
PK22924.1 Cannabis sativa PK22924.1 N 0.481
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.480
Bo4g182600 Brassica oleracea Bo4g182600 N 0.480
Bra021911 Brassica rapa Bra021911 N 0.480
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.463
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.457
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.457
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.455
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.454
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.452
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.450
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.450
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.446
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.443
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.442
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.442
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.442
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.441
TCM_042534 Theobroma cacao TCM_042534 I 0.441
HMG-1 Pisum sativum Q41026_PEA D 0.441
MDP0000170945 Malus domestica MDP0000170945 N 0.436
MDP0000392251 Malus domestica MDP0000392251 N 0.436
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.436
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.435
HMGB1 Arabidopsis thaliana AT3G51880 I 0.433
Bo8g081200 Brassica oleracea Bo8g081200 I 0.433
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.433
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.433
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.433
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.433
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.433
CHLREDRAFT_142283 Chlamydomonas reinhardtii CHLREDRAFT_142283 N 0.431
HMGB2 Arabidopsis thaliana AT1G20693 I 0.430
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.430
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.430
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.430
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.430
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.430
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.430
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.430
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.430
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.430
Bo7g101270 Brassica oleracea Bo7g101270 I 0.429
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.429
Bra002073 Brassica rapa Bra002073 I 0.427
estExt_Genewise1.C_10428 Volvox carteri estExt_Genewise1.C_10428 N 0.427
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.427
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.426
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.426
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.426
OB06G35870 Oryza brachyantha OB06G35870 I 0.426
OBART06G28090 Oryza barthii OBART06G28090 I 0.426
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.426
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.426
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.426
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.426
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.426
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.426
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.426
OS06G0728000 Oryza sativa OS06G0728000 I 0.426
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.426
Si007288m.g Setaria italica Si007288m.g I 0.426
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.426
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.426
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.425
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.425
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.425
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.425
GUITHDRAFT_114564 Guillardia theta GUITHDRAFT_114564 N 0.423
GUITHDRAFT_76406 Guillardia theta GUITHDRAFT_76406 N 0.423
OSTLU_19125 Ostreococcus lucimarinus OSTLU_19125 N 0.423
F775_27510 Aegilops tauschii F775_27510 I 0.420
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.420
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.420
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.417
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.417
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.417
Pm002934 Prunus mume Pm002934 I 0.417
mgf016363m Mimulus guttatus mgf016363m I 0.417
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.417
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.415
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.415
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.415
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.415