fgenesh2_pg.scaffold_177000008 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.scaffold_177000008 T334146_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_177000008 Sox 172 240

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29693.m002039 Ricinus communis 29693.m002039 I 0.000
AGL29 Arabidopsis thaliana AT2G34440 I 0.000
Bo4g182590 Brassica oleracea Bo4g182590 I 0.000
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I 0.000
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.000
Bra021910 Brassica rapa Bra021910 I 0.000
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I 0.000
Carubv10025656m.g Capsella rubella Carubv10025656m.g I 0.000
cassava10519.m1 Manihot esculenta cassava10519.m1 I 0.000
Ca_05023 Cicer arietinum Ca_05023 I 0.000
Ca_24185 Cicer arietinum Ca_24185 I 0.000
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.000
Cla019897 Citrullus lanatus Cla019897 N 0.000
Cucsa.212320 Cucumis sativus Cucsa.212320 N 0.000
Eucgr.D00311 Eucalyptus grandis Eucgr.D00311 N 0.000
Eucgr.D00312 Eucalyptus grandis Eucgr.D00312 N 0.000
Eucgr.D00313 Eucalyptus grandis Eucgr.D00313 N 0.000
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.000
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I 0.000
gene14058-v1.0-hybrid Fragaria vesca gene14058-v1.0-hybrid I 0.000
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.000
GLYMA08G03793 Glycine max GLYMA08G03793 N 0.000
GLYMA18G20830 Glycine max GLYMA18G20830 I 0.000
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.000
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.000
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.000
Lus10011787.g Linum usitatissimum Lus10011787.g N 0.000
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.000
Lus10016563.g Linum usitatissimum Lus10016563.g N 0.000
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.000
MDP0000120467 Malus domestica MDP0000120467 N 0.000
MDP0000274606 Malus domestica MDP0000274606 N 0.000
MTR_1g054265 Medicago truncatula MTR_1g054265 I 0.000
MTR_4g131030 Medicago truncatula MTR_4g131030 I 0.000
MTR_8g046350 Medicago truncatula MTR_8g046350 N 0.000
MTR_8g051580 Medicago truncatula MTR_8g051580 I 0.000
MTR_8g079502 Medicago truncatula MTR_8g079502 I 0.000
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.000
Pm030655 Prunus mume Pm030655 I 0.000
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.000
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.000
SapurV1A.0560s0040 Salix purpurea SapurV1A.0560s0040 N 0.000
SapurV1A.2238s0010 Salix purpurea SapurV1A.2238s0010 N 0.000
TCM_029518 Theobroma cacao TCM_029518 I 0.000
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.000
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.000
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I 0.000