gw.110.115.1 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gw.110.115.1 T334219_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
gw.110.115.1 Sox 1 54

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O9_05704 Exophiala aquamarina A1O9_05704 N 0.432
ACOM029353 Anopheles coluzzii ACOM029353 I 0.493
AMEC000538 Anopheles melas AMEC000538 I 0.488
Brh_R004116 Buceros rhinoceros Brh_R004116 N 0.446
CAA46605 Xenopus laevis CAA46605 N 0.595
CAA46607 Xenopus laevis CAA46607 N 0.589
CFIO01_04514 Colletotrichum fioriniae CFIO01_04514 N 0.450
CGOC_0001370301 Cylicostephanus goldi CGOC_0001370301 N 0.449
csin108932 Clonorchis sinensis csin108932 I 0.496
ENSECAG00000006516 Equus caballus ENSECAG00000006516 I 0.503
SOX8 Equus caballus ENSECAG00000016320 I 0.462
ENSLOCG00000011834 Lepisosteus oculatus ENSLOCG00000011834 I 0.465
ENSOARG00000000906 Ovis aries ENSOARG00000000906 I 0.487
ENSP00000322568 Macaca fascicularis ENSP00000322568 I 0.497
ENSPANG00000005859 Papio anubis ENSPANG00000005859 I 0.487
ENSSTOG00000011011 Ictidomys tridecemlineatus ENSSTOG00000011011 I 0.493
fgenesh2_pg.scaffold_1022000007 Branchiostoma floridae fgenesh2_pg.scaffold_1022000007 I 0.414
GLOINDRAFT_323774 Rhizophagus irregularis GLOINDRAFT_323774 N 0.434
GLOINDRAFT_347803 Rhizophagus irregularis GLOINDRAFT_347803 N 0.429
GPLIN_000596700 Globodera pallida GPLIN_000596700 I 0.567
GPLIN_000970900 Globodera pallida GPLIN_000970900 N 0.488
GPLIN_001405800 Globodera pallida GPLIN_001405800 I 0.423
Hba_21281 Heterorhabditis bacteriophora Hba_21281 N 0.488
HMEL002398 Heliconius melpomene HMEL002398 I 0.424
HMEL006651 Heliconius melpomene HMEL006651 I 0.424
L798_12049 Zootermopsis nevadensis L798_12049 I 0.422
LDEC019307 Leptinotarsa decemlineata LDEC019307 N 0.488
maker-nMf.1.1.scaf00287-augustus-gene-0.13 Meloidogyne floridensis maker-nMf.1.1.scaf00287-augustus-gene-0.13 I 0.491
MESCA012239 Megaselia scalaris MESCA012239 I 0.453
Myotis_brandtii_SOX2_10019709 Myotis brandtii Myotis_brandtii_SOX2_10019709 I 0.488
Ogr08337 Ophisaurus gracilis Ogr08337 N 0.488
PDIP_33190 Penicillium digitatum PDIP_33190 N 0.432
PEX1_064750 Penicillium expansum PEX1_064750 N 0.432
PFICI_02946 Pestalotiopsis fici PFICI_02946 N 0.434
PPAI003639 Phlebotomus papatasi PPAI003639 N 0.496
PXEA_0000763901 Protopolystoma xenopodis PXEA_0000763901 N 0.448
PXEA_0002992801 Protopolystoma xenopodis PXEA_0002992801 N 0.496
Sjc_0107520 Schistosoma japonicum Sjc_0107520 N 0.503
SMU15030186 Schmidtea mediterranea SMU15030186 N 0.481
SPER_0001708101 Spirometra erinaceieuropaei SPER_0001708101 N 0.470
SPER_0001952401 Spirometra erinaceieuropaei SPER_0001952401 N 0.470
T265_14506 Opisthorchis viverrini T265_14506 I 0.496
TRE_0000259001 Trichobilharzia regenti TRE_0000259001 N 0.496
TTAC_0001064401 Hydatigera taeniaeformis TTAC_0001064401 N 0.459
sox-2 Caenorhabditis elegans WBGene00004949 I 0.488
sox13.S Xenopus laevis XB-GENE-865496 I 0.707
sox5.S Xenopus laevis XB-GENE-865667 I 0.703
XP_002935940 Xenopus tropicalis XP_002935940 N 0.449