CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GRMZM2G142751 *(Zea mays)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	GRMZM2G142751	T343932_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.968	0.647
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.964	0.566
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.964	0.566
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.964	0.566
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.964	0.566
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.964	0.566
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.957	0.559
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.956	0.537
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.953	0.507
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.953	0.507
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.952	0.434
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.949	0.419
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.946	0.412
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.945	0.404
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.945	0.404
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.945	0.404
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.945	0.404
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.942	0.441
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.942	0.419
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.942	0.434
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.942	0.434
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.942	0.434
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.942	0.434
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.942	0.434
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.941	0.434
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.941	0.434
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.940	0.412
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.940	0.412
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.940	0.449
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.940	0.419
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.938	0.441
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.933	0.397
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.933	0.390
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.897	0.434
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.897	0.434
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
GRMZM2G142751_P01	TCP	57	228	TSSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHRTDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSYFSIPAHLRAAGLPGPRFSGARGDPWERVVGLGFGGAEGPPSATSSPLLLSFHSGSVGLDVSSPSSSSAAANSDLSKKRRWEQEMQQQQQQYQ

Links
Other TCP family TFs
Other *Zea mays* TFs

651 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
29820.m001008	Ricinus communis	29820.m001008	I
DREB2A	Arabidopsis thaliana	AT5G05410	D
Bo1g141310	Brassica oleracea	Bo1g141310	I
Bo2g006960	Brassica oleracea	Bo2g006960	I
Bostr.13129s0423	Boechera stricta	Bostr.13129s0423	I
Bostr.19424s1037	Boechera stricta	Bostr.19424s1037	I
Bra005852	Brassica rapa	Bra005852	I
Bra028759	Brassica rapa	Bra028759	I
Cagra.1504s0045	Capsella grandiflora	Cagra.1504s0045	I
Cagra.1655s0066	Capsella grandiflora	Cagra.1655s0066	I
Cagra.7053s0020	Capsella grandiflora	Cagra.7053s0020	I
Carubv10001099m.g	Capsella rubella	Carubv10001099m.g	I
Carubv10013771m.g	Capsella rubella	Carubv10013771m.g	I
Carubv10023556m.g	Capsella rubella	Carubv10023556m.g	I
cassava46663.m1	Manihot esculenta	cassava46663.m1	I
chr1.LjT01D01.90.nd	Lotus japonicus	chr1.LjT01D01.90.nd	I
Eucgr.K02952	Eucalyptus grandis	Eucgr.K02952	I
DREB2B	Arabidopsis lyrata	fgenesh2_kg.3__1148__AT3G11020.1	I
DREB2A	Arabidopsis lyrata	fgenesh2_kg.6__469__AT5G05410.1	I
GLYMA07G19221	Glycine max	GLYMA07G19221	I
GLYMA18G43750	Glycine max	GLYMA18G43750	I
GSMUA_Achr9G04630_001	Musa acuminata	GSMUA_Achr9G04630_001	I
PDK_20s1493381g003	Phoenix dactylifera	PDK_20s1493381g003	I
PGSC0003DMG400027117	Solanum tuberosum	PGSC0003DMG400027117	I
PGSC0003DMG401023951	Solanum tuberosum	PGSC0003DMG401023951	I
Solyc05g052410.1	Solanum lycopersicum	Solyc05g052410.1	I
TCM_021596	Theobroma cacao	TCM_021596	I
Thhalv10021161m.g	Eutrema salsugineum	Thhalv10021161m.g	I

GRMZM2G142751 (Zea mays) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

651 Related TFs

GRMZM2G142751 **(Zea mays)
TCP**