CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LACBIDRAFT_302761
(
Laccaria bicolor
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
LACBIDRAFT_302761
T372091_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCHCODRAFT_67234
M01419_2.00
Schizophyllum commune
BATCGGAV
BTCCGATV
PBM
Lambert et al.(2019)
pTH9776
0.683
0.971
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDR05637
Zinc cluster
31
67
LSCAECRRLKLRCDRAVPCSSCVKRGCGAICPDGSLT
Links
Other
Zinc cluster
family TFs
Other
Laccaria bicolor
TFs
137 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_009_00307
Aquilegia coerulea
Aquca_009_00307
N
AT2G44020
Arabidopsis thaliana
AT2G44020
N
Bo4g021230
Brassica oleracea
Bo4g021230
N
Bostr.25993s0368
Boechera stricta
Bostr.25993s0368
N
Cagra.1517s0032
Capsella grandiflora
Cagra.1517s0032
N
Carubv10023033m.g
Capsella rubella
Carubv10023033m.g
N
cassava22183.valid.m1
Manihot esculenta
cassava22183.valid.m1
N
Ca_10412
Cicer arietinum
Ca_10412
N
Ciclev10000930m.g
Citrus clementina
Ciclev10000930m.g
N
Cla017427
Citrullus lanatus
Cla017427
N
Eucgr.F02687
Eucalyptus grandis
Eucgr.F02687
N
evm.TU.supercontig_151.12
Carica papaya
evm.TU.supercontig_151.12
N
Gorai.003G090600
Gossypium raimondii
Gorai.003G090600
N
mgf008193m
Mimulus guttatus
mgf008193m
N
MTR_1g115415
Medicago truncatula
MTR_1g115415
N
OBART02G35020
Oryza barthii
OBART02G35020
N
orange1.1g048759m.g
Citrus sinensis
orange1.1g048759m.g
N
PK11431.1
Cannabis sativa
PK11431.1
N
Pm022294
Prunus mume
Pm022294
N
POPTR_0013s12100
Populus trichocarpa
POPTR_0013s12100
N
PRUPE_ppa005819mg
Prunus persica
PRUPE_ppa005819mg
N
SapurV1A.0179s0360
Salix purpurea
SapurV1A.0179s0360
N
SapurV1A.0287s0020
Salix purpurea
SapurV1A.0287s0020
N
SapurV1A.0596s0020
Salix purpurea
SapurV1A.0596s0020
N
scaffold_403309.1
Arabidopsis lyrata
scaffold_403309.1
N
TCM_001393
Theobroma cacao
TCM_001393
N
Thhalv10001406m.g
Eutrema salsugineum
Thhalv10001406m.g
N
VIT_11s0016g02240
Vitis vinifera
VIT_11s0016g02240
N