Bra011782 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra011782 T001068_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.847 0.903
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.847 0.903
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.829 0.864
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.829 0.864
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.800 0.825
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.800 0.825
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.753 0.816
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.753 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra011782.1-P AP2 274 331
Bra011782.1-P AP2 373 425

Links

Other AP2 family TFs
Other Brassica rapa TFs

523 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00022p00190540 Amborella trichopoda AMTR_s00022p00190540 I 0.000
AMTR_s00025p00224230 Amborella trichopoda AMTR_s00025p00224230 I 0.000
BGIOSGA014151 Oryza indica BGIOSGA014151 I 0.000
Bo9g175820 Brassica oleracea Bo9g175820 I 0.000
Bra009228 Brassica rapa Bra009228 I 0.000
BRADI5G25320 Brachypodium distachyon BRADI5G25320 I 0.000
GLYMA03G29940 Glycine max GLYMA03G29940 I 0.000
GLYMA18G43130 Glycine max GLYMA18G43130 I 0.000
GLYMA19G32850 Glycine max GLYMA19G32850 I 0.000
GRMZM2G124495 Zea mays GRMZM2G124495 I 0.000
GSMUA_Achr4G19300_001 Musa acuminata GSMUA_Achr4G19300_001 I 0.000
GSMUA_Achr7G06370_001 Musa acuminata GSMUA_Achr7G06370_001 I 0.000
LPERR04G24240 Leersia perrieri LPERR04G24240 I 0.000
MLOC_52271 Hordeum vulgare MLOC_52271 I 0.000
OB04G35670 Oryza brachyantha OB04G35670 I 0.000
OBART04G28680 Oryza barthii OBART04G28680 I 0.000
OGLUM04G28560 Oryza glumaepatula OGLUM04G28560 I 0.000
OLONG_005000 Oryza longistaminata OLONG_005000 I 0.000
OMERI04G24260 Oryza meridionalis OMERI04G24260 I 0.000
ONIVA04G27220 Oryza nivara ONIVA04G27220 I 0.000
OPUNC04G26200 Oryza punctata OPUNC04G26200 I 0.000
ORGLA04G0249600 Oryza glaberrima ORGLA04G0249600 I 0.000
ORUFI04G30350 Oryza rufipogon ORUFI04G30350 I 0.000
OS04G0665600 Oryza sativa OS04G0665600 I 0.000
Sb05g000480 Sorghum bicolor Sb05g000480 I 0.000
Sb06g031970 Sorghum bicolor Sb06g031970 I 0.000
SELMODRAFT_414222 Selaginella moellendorffii SELMODRAFT_414222 I 0.000
SELMODRAFT_422768 Selaginella moellendorffii SELMODRAFT_422768 I 0.000
SELMODRAFT_426960 Selaginella moellendorffii SELMODRAFT_426960 I 0.000
SELMODRAFT_438636 Selaginella moellendorffii SELMODRAFT_438636 I 0.000
Si022099m.g Setaria italica Si022099m.g I 0.000
Solyc02g080860.1 Solanum lycopersicum Solyc02g080860.1 I 0.000
VIT_08s0007g06180 Vitis vinifera VIT_08s0007g06180 I 0.000
VIT_08s0007g06310 Vitis vinifera VIT_08s0007g06310 I 0.000
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I 0.000
VIT_13s0156g00390 Vitis vinifera VIT_13s0156g00390 I 0.000
Ca_07304 Cicer arietinum Ca_07304 I 0.000
cassava16780.m1 Manihot esculenta cassava16780.m1 I 0.000
estExt_fgenesh1_pg.C_1660037 Physcomitrella patens estExt_fgenesh1_pg.C_1660037 I 0.000
estExt_fgenesh1_pg.C_550102 Physcomitrella patens estExt_fgenesh1_pg.C_550102 I 0.000
est_orfs.1_306_4269596:1 Micromonas pusilla est_orfs.1_306_4269596:1 I 0.000
fgenesh2_pg.scaffold_82000058 Physcomitrella patens fgenesh2_pg.scaffold_82000058 I 0.000
Aquca_004_00369 Aquilegia coerulea Aquca_004_00369 I 0.000
Ciclev10004984m.g Citrus clementina Ciclev10004984m.g I 0.000
Ciclev10015819m.g Citrus clementina Ciclev10015819m.g I 0.000
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I 0.000
Lus10022886.g Linum usitatissimum Lus10022886.g I 0.000
MDP0000142146 Malus domestica MDP0000142146 I 0.000
MDP0000182154 Malus domestica MDP0000182154 I 0.000
orange1.1g014308m.g Citrus sinensis orange1.1g014308m.g I 0.000
orange1.1g038268m.g Citrus sinensis orange1.1g038268m.g I 0.000
Pavir.Ga00160 Panicum virgatum Pavir.Ga00160 I 0.000
Pavir.J05593 Panicum virgatum Pavir.J05593 I 0.000
chr1.LjB18K24.110.nd Lotus japonicus chr1.LjB18K24.110.nd I 0.000
chr5.LjT42I01.50.nd Lotus japonicus chr5.LjT42I01.50.nd I 0.000
AT5G06800 Arabidopsis thaliana AT5G06800 N 0.000
Bo2g007410 Brassica oleracea Bo2g007410 N 0.000
Bo3g004040 Brassica oleracea Bo3g004040 N 0.000
Bra005912 Brassica rapa Bra005912 N 0.000
Bra028717 Brassica rapa Bra028717 N 0.000
fgenesh2_kg.6__627__AT5G06800.1 Arabidopsis lyrata fgenesh2_kg.6__627__AT5G06800.1 N 0.000
GLYMA02G30800 Glycine max GLYMA02G30800 N 0.000
GLYMA09G17404 Glycine max GLYMA09G17404 N 0.000
MTR_1g053835 Medicago truncatula MTR_1g053835 N 0.000
MTR_7g068600 Medicago truncatula MTR_7g068600 N 0.000
MTR_7g093030 Medicago truncatula MTR_7g093030 N 0.000
PGSC0003DMG400011435 Solanum tuberosum PGSC0003DMG400011435 N 0.000
PGSC0003DMG400023674 Solanum tuberosum PGSC0003DMG400023674 N 0.000
POPTR_0001s23560 Populus trichocarpa POPTR_0001s23560 N 0.000
POPTR_0006s20540 Populus trichocarpa POPTR_0006s20540 N 0.000
POPTR_0016s04830 Populus trichocarpa POPTR_0016s04830 N 0.000
PRUPE_ppa016067mg Prunus persica PRUPE_ppa016067mg N 0.000
Solyc10g078720.1 Solanum lycopersicum Solyc10g078720.1 N 0.000
Solyc10g080460.1 Solanum lycopersicum Solyc10g080460.1 N 0.000
TCM_024886 Theobroma cacao TCM_024886 N 0.000
Ca_14198 Cicer arietinum Ca_14198 N 0.000
Cla011853 Citrullus lanatus Cla011853 N 0.000
Pm025973 Prunus mume Pm025973 N 0.000
28582.m000316 Ricinus communis 28582.m000316 N 0.000
28582.m000317 Ricinus communis 28582.m000317 N 0.000
28582.m000318 Ricinus communis 28582.m000318 N 0.000
30226.m001993 Ricinus communis 30226.m001993 N 0.000
cassava12253.valid.m1 Manihot esculenta cassava12253.valid.m1 N 0.000
cassava12254.valid.m1 Manihot esculenta cassava12254.valid.m1 N 0.000
cassava12255.valid.m1 Manihot esculenta cassava12255.valid.m1 N 0.000
cassava39743.m1 Manihot esculenta cassava39743.m1 N 0.000
Cucsa.353890 Cucumis sativus Cucsa.353890 N 0.000
mgf007532m Mimulus guttatus mgf007532m N 0.000
mgf007985m Mimulus guttatus mgf007985m N 0.000
mgf015795m Mimulus guttatus mgf015795m N 0.000
mgf017208m Mimulus guttatus mgf017208m N 0.000
Aquca_009_00165 Aquilegia coerulea Aquca_009_00165 N 0.000
Aquca_012_00204 Aquilegia coerulea Aquca_012_00204 N 0.000
Bostr.13129s0292 Boechera stricta Bostr.13129s0292 N 0.000
Cagra.8005s0016 Capsella grandiflora Cagra.8005s0016 N 0.000
Carubv10003217m.g Capsella rubella Carubv10003217m.g N 0.000
Ciclev10012014m.g Citrus clementina Ciclev10012014m.g N 0.000
Ciclev10033388m.g Citrus clementina Ciclev10033388m.g N 0.000
Eucgr.A02444 Eucalyptus grandis Eucgr.A02444 N 0.000
evm.TU.supercontig_85.82 Carica papaya evm.TU.supercontig_85.82 N 0.000
gene22647-v1.0-hybrid Fragaria vesca gene22647-v1.0-hybrid N 0.000
Gorai.001G225500 Gossypium raimondii Gorai.001G225500 N 0.000
Gorai.002G225400 Gossypium raimondii Gorai.002G225400 N 0.000
Gorai.006G142000 Gossypium raimondii Gorai.006G142000 N 0.000
Lus10021035.g Linum usitatissimum Lus10021035.g N 0.000
Lus10023816.g Linum usitatissimum Lus10023816.g N 0.000
MDP0000121180 Malus domestica MDP0000121180 N 0.000
MDP0000179986 Malus domestica MDP0000179986 N 0.000
MDP0000184307 Malus domestica MDP0000184307 N 0.000
MDP0000253656 Malus domestica MDP0000253656 N 0.000
MDP0000280005 Malus domestica MDP0000280005 N 0.000
orange1.1g018583m.g Citrus sinensis orange1.1g018583m.g N 0.000
orange1.1g035950m.g Citrus sinensis orange1.1g035950m.g N 0.000
SapurV1A.0008s0360 Salix purpurea SapurV1A.0008s0360 N 0.000
SapurV1A.0018s0530 Salix purpurea SapurV1A.0018s0530 N 0.000
SapurV1A.0251s0040 Salix purpurea SapurV1A.0251s0040 N 0.000
SapurV1A.4156s0010 Salix purpurea SapurV1A.4156s0010 N 0.000
Thhalv10013850m.g Eutrema salsugineum Thhalv10013850m.g N 0.000
PK00827.1 Cannabis sativa PK00827.1 N 0.000
chr1.LjT38A19.30.nc Lotus japonicus chr1.LjT38A19.30.nc N 0.000
PDK_20s1349221g001 Phoenix dactylifera PDK_20s1349221g001 N 0.000