OB09G15200 (Oryza brachyantha)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OB09G15200 T003053_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.851 0.960
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.838 0.940
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.838 0.940
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.722 0.860
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.722 0.860
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.685 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB09G15200.1 AP2 105 156

Links

Other AP2 family TFs
Other Oryza brachyantha TFs

449 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.213230 Cucumis sativus Cucsa.213230 I
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I
Cla019977 Citrullus lanatus Cla019977 I
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I
evm.TU.supercontig_92.83 Carica papaya evm.TU.supercontig_92.83 N
Gorai.007G352300 Gossypium raimondii Gorai.007G352300 N
Eucgr.A02230 Eucalyptus grandis Eucgr.A02230 N
Carubv10023903m.g Capsella rubella Carubv10023903m.g N
Carubv10017947m.g Capsella rubella Carubv10017947m.g N
Cagra.1642s0077 Capsella grandiflora Cagra.1642s0077 N
Cagra.0578s0007 Capsella grandiflora Cagra.0578s0007 N
Bostr.9345s0019 Boechera stricta Bostr.9345s0019 N
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N
Cucsa.340200 Cucumis sativus Cucsa.340200 N
gene14814-v1.0-hybrid Fragaria vesca gene14814-v1.0-hybrid N
30180.m001071 Ricinus communis 30180.m001071 N
Lus10018020.g Linum usitatissimum Lus10018020.g N
Lus10042017.g Linum usitatissimum Lus10042017.g N
MDP0000138102 Malus domestica MDP0000138102 N
MDP0000213892 Malus domestica MDP0000213892 N
Pavir.J02699 Panicum virgatum Pavir.J02699 N
Pavir.J24868 Panicum virgatum Pavir.J24868 N
SapurV1A.0159s0020 Salix purpurea SapurV1A.0159s0020 N
SapurV1A.0189s0140 Salix purpurea SapurV1A.0189s0140 N
Thhalv10006410m.g Eutrema salsugineum Thhalv10006410m.g N
Thhalv10017546m.g Eutrema salsugineum Thhalv10017546m.g N
PK23387.1 Cannabis sativa PK23387.1 N
chr1.CM0816.330.nc Lotus japonicus chr1.CM0816.330.nc N
ORGLA03G0352000 Oryza glaberrima ORGLA03G0352000 N
Bo3g035410 Brassica oleracea Bo3g035410 N
Bo4g012960 Brassica oleracea Bo4g012960 N
Bo4g112750 Brassica oleracea Bo4g112750 N
Bo4g190700 Brassica oleracea Bo4g190700 N
Bra004599 Brassica rapa Bra004599 N
Bra014672 Brassica rapa Bra014672 N
Bra016951 Brassica rapa Bra016951 N
BRADI1G04280 Brachypodium distachyon BRADI1G04280 N
GLYMA02G23590 Glycine max GLYMA02G23590 N
GLYMA03G28150 Glycine max GLYMA03G28150 N
GLYMA19G30910 Glycine max GLYMA19G30910 N
GRMZM2G027068 Zea mays GRMZM2G027068 N
GSMUA_Achr8G23980_001 Musa acuminata GSMUA_Achr8G23980_001 N
cassava7163.valid.m1 Manihot esculenta cassava7163.valid.m1 N
OS03G0811400 Oryza sativa OS03G0811400 N
PGSC0003DMG400008378 Solanum tuberosum PGSC0003DMG400008378 N
POPTR_0006s03550 Populus trichocarpa POPTR_0006s03550 N
POPTR_0016s03460 Populus trichocarpa POPTR_0016s03460 N
PRUPE_ppa011532mg Prunus persica PRUPE_ppa011532mg N
Sb01g003830 Sorghum bicolor Sb01g003830 N
Solyc10g078380.1 Solanum lycopersicum Solyc10g078380.1 N
TCM_024016 Theobroma cacao TCM_024016 N
Traes_5BL_CBFAD4B59 Triticum aestivum Traes_5BL_CBFAD4B59 N
Ca_07159 Cicer arietinum Ca_07159 N
Cla017413 Citrullus lanatus Cla017413 N
Pm025589 Prunus mume Pm025589 N
BHLH106 Arabidopsis thaliana AT2G41130 N