CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TCM_031608 *(Theobroma cacao)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	TCM_031608	T005644_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.848	0.940
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.848	0.940
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.848	0.940
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.836	0.880
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.836	0.880
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.829	0.880
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.829	0.880
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.822	0.860
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.813	0.900
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.813	0.900
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.813	0.900
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.756	0.840
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.756	0.840
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.756	0.840
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.748	0.800
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.748	0.800
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.744	0.780
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.744	0.780
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.744	0.780
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.739	0.740
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.728	0.760
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.727	0.760
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.718	0.760
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.718	0.760
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.718	0.760
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.715	0.700
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.707	0.700
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.707	0.700
PK17878.1 M01099_2.00	Cannabis sativa	CGCCGYCR	YGRCGGCG	PBM Lambert et al.(2019) pTH10133	0.705	0.760
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.703	0.720
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.703	0.720
ERF3 M01607_2.00	Arabidopsis thaliana	CGCCGSCR	YGSCGGCG	PBM Weirauch et al.(2014) pTH8109	0.702	0.700
ERF3 M06584_2.00	Arabidopsis thaliana	YHDYCKCCGCCGYHD	HDRCGGCGGMGRHDR	Dap-seq OMalley et al.(2016) ERF3_col_a	0.702	0.700
ERF3 M06585_2.00	Arabidopsis thaliana	NNHHDNHNNYDCCGCCGYCR	YGRCGGCGGHRNNDNHDDNN	Dap-seq OMalley et al.(2016) ERF3_colamp_a	0.702	0.700
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.700	0.700
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.700	0.700
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.700	0.700
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.699	0.720
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.699	0.700
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.699	0.700
ERF087 M06573_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYYD	HRRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) AT1G28160_col_a	0.698	0.740
ERF087 M06574_2.00	Arabidopsis thaliana	HDYCKCCGCCGYCR	YGRCGGCGGMGRHD	Dap-seq OMalley et al.(2016) AT1G28160_colamp_a	0.698	0.740
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.695	0.620
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.694	0.700
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.694	0.700
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.693	0.740
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.691	0.660
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.688	0.740
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.688	0.680
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.686	0.720
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.686	0.720
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.686	0.720
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.686	0.720
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.686	0.680
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.686	0.680
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.680	0.620
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.678	0.720
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.678	0.720
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.678	0.720
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.678	0.760
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EOY13085	AP2	21	72	IRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFDTAEEAARAYDAAAREFRGA

Links
Other AP2 family TFs
Other *Theobroma cacao* TFs

1700 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
NAC043	Arabidopsis thaliana	AT2G46770	D
OS06G0131700	Oryza sativa	OS06G0131700	D
Cucsa.120870	Cucumis sativus	Cucsa.120870	I
Traes_4AL_2257954B9	Triticum aestivum	Traes_4AL_2257954B9	I
cassava33021.m1	Manihot esculenta	cassava33021.m1	I
27964.m000369	Ricinus communis	27964.m000369	I
Pm018292	Prunus mume	Pm018292	I
Cla011508	Citrullus lanatus	Cla011508	I
Cla006806	Citrullus lanatus	Cla006806	I
Ca_22426	Cicer arietinum	Ca_22426	I
Ca_22425	Cicer arietinum	Ca_22425	I
VIT_15s0048g02660	Vitis vinifera	VIT_15s0048g02660	I
ANAC012	Vitis vinifera	VIT_02s0025g02710	I
TRIUR3_32451	Triticum urartu	TRIUR3_32451	I
TRIUR3_27911	Triticum urartu	TRIUR3_27911	I
TRIUR3_14545	Triticum urartu	TRIUR3_14545	I
TRIUR3_14544	Triticum urartu	TRIUR3_14544	I
TRIUR3_14543	Triticum urartu	TRIUR3_14543	I
Traes_7DL_1AD9A3E8D	Triticum aestivum	Traes_7DL_1AD9A3E8D	I
Traes_7AL_B000BC0DD	Triticum aestivum	Traes_7AL_B000BC0DD	I
Traes_4AL_8FABAA6C3	Triticum aestivum	Traes_4AL_8FABAA6C3	I
Traes_4AL_3AFF9664B	Triticum aestivum	Traes_4AL_3AFF9664B	I
TCM_005047	Theobroma cacao	TCM_005047	I
Lus10002687.g	Linum usitatissimum	Lus10002687.g	I
PDK_20s1408241g001	Phoenix dactylifera	PDK_20s1408241g001	I
LjSGA_027787.1	Lotus japonicus	LjSGA_027787.1	I
PK04961.1	Cannabis sativa	PK04961.1	I
Thhalv10001506m.g	Eutrema salsugineum	Thhalv10001506m.g	I
SapurV1A.0162s0220	Salix purpurea	SapurV1A.0162s0220	I
Pavir.J21162	Panicum virgatum	Pavir.J21162	I
Pavir.J20698	Panicum virgatum	Pavir.J20698	I
orange1.1g015853m.g	Citrus sinensis	orange1.1g015853m.g	I
MDP0000563165	Malus domestica	MDP0000563165	I
Lus10030205.g	Linum usitatissimum	Lus10030205.g	I
Cucsa.193460	Cucumis sativus	Cucsa.193460	I
Gorai.007G112500	Gossypium raimondii	Gorai.007G112500	I
Gorai.001G150800	Gossypium raimondii	Gorai.001G150800	I
gene18636-v1.0-hybrid	Fragaria vesca	gene18636-v1.0-hybrid	I
Eucgr.D01671	Eucalyptus grandis	Eucgr.D01671	I
Ciclev10024035m.g	Citrus clementina	Ciclev10024035m.g	I
Carubv10023503m.g	Capsella rubella	Carubv10023503m.g	I
Cagra.0050s0024	Capsella grandiflora	Cagra.0050s0024	I
Bostr.25993s0090	Boechera stricta	Bostr.25993s0090	I
Aquca_037_00272	Aquilegia coerulea	Aquca_037_00272	I
mgf022455m	Mimulus guttatus	mgf022455m	I
GLYMA19G44890	Glycine max	GLYMA19G44890	I
MTR_8g024480	Medicago truncatula	MTR_8g024480	I
MLOC_75524	Hordeum vulgare	MLOC_75524	I
MLOC_66924	Hordeum vulgare	MLOC_66924	I
LPERR06G01790	Leersia perrieri	LPERR06G01790	I
GSMUA_AchrUn_randomG21980_001	Musa acuminata	GSMUA_AchrUn_randomG21980_001	I
GSMUA_Achr9G24450_001	Musa acuminata	GSMUA_Achr9G24450_001	I
GSMUA_Achr7G05980_001	Musa acuminata	GSMUA_Achr7G05980_001	I
GSMUA_Achr3G12230_001	Musa acuminata	GSMUA_Achr3G12230_001	I
GRMZM2G171395	Zea mays	GRMZM2G171395	I
GRMZM2G092465	Zea mays	GRMZM2G092465	I
Solyc08g008660.2	Solanum lycopersicum	Solyc08g008660.2	I
GLYMA16G02200	Glycine max	GLYMA16G02200	I
GLYMA07G05660	Glycine max	GLYMA07G05660	I
F775_21627	Aegilops tauschii	F775_21627	I
F775_11081	Aegilops tauschii	F775_11081	I
Bra040486	Brassica rapa	Bra040486	I
Bra004509	Brassica rapa	Bra004509	I
Bo4g197330	Brassica oleracea	Bo4g197330	I
Bo4g006990	Brassica oleracea	Bo4g006990	I
BGIOSGA022006	Oryza indica	BGIOSGA022006	I
OBART06G01950	Oryza barthii	OBART06G01950	I
AMTR_s00113p00077540	Amborella trichopoda	AMTR_s00113p00077540	I
Si006565m.g	Setaria italica	Si006565m.g	I
NST1	Arabidopsis lyrata	scaffold_403649.1	I
Sb10g002120	Sorghum bicolor	Sb10g002120	I
Sb07g001550	Sorghum bicolor	Sb07g001550	I
PRUPE_ppa020746mg	Prunus persica	PRUPE_ppa020746mg	I
POPTR_0014s10060	Populus trichocarpa	POPTR_0014s10060	I
POPTR_0002s17950	Populus trichocarpa	POPTR_0002s17950	I
PGSC0003DMG400012113	Solanum tuberosum	PGSC0003DMG400012113	I
PGSC0003DMG400005807	Solanum tuberosum	PGSC0003DMG400005807	I
ORUFI06G01950	Oryza rufipogon	ORUFI06G01950	I
ORGLA06G0019800	Oryza glaberrima	ORGLA06G0019800	I
OPUNC06G01800	Oryza punctata	OPUNC06G01800	I
ONIVA06G02290	Oryza nivara	ONIVA06G02290	I
OMERI08G01360	Oryza meridionalis	OMERI08G01360	I
OMERI06G01850	Oryza meridionalis	OMERI06G01850	I
OGLUM06G01950	Oryza glumaepatula	OGLUM06G01950	I
OB06G11970	Oryza brachyantha	OB06G11970	I
GLYMA19G44910	Glycine max	GLYMA19G44910	N
PRUPE_ppa024439mg	Prunus persica	PRUPE_ppa024439mg	N
F775_10855	Aegilops tauschii	F775_10855	N
Pm021945	Prunus mume	Pm021945	N
PDK_20s1484021g001	Phoenix dactylifera	PDK_20s1484021g001	N

TCM_031608 (Theobroma cacao) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1700 Related TFs

TCM_031608 **(Theobroma cacao)
AP2**