NAC043 (Arabidopsis thaliana)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 AT2G46770 T292055_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC043
M02370_2.00		 Arabidopsis thaliana
NTTACGYWAN
NTWRCGTAAN		 PBM
Weirauch et al.(2014)
pTH8161		 (Direct) (Direct)
NAC043
M07192_2.00		 Arabidopsis thaliana
TRCKTVHDNHNYAMG
CKTRNDNHDBAMGYA		 Dap-seq
OMalley et al.(2016)
NST1_colamp_a		 (Direct) (Direct)
NAC043
M07193_2.00		 Arabidopsis thaliana
RCKTVHDNHNYAMGYWA
TWRCKTRNDNHDBAMGY		 Dap-seq
OMalley et al.(2016)
NST1_col_v31		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC066
M00978_2.00 		Arabidopsis thaliana
NBNNHNBNNN
NNNVNDNNVN		 PBM
Lindemose et al.(2014)
NST2 		0.940 0.895
OS06G0131700
M02378_2.00 		Oryza sativa
NNNNHMDNND
HNNHKDNNNN		 PBM
Weirauch et al.(2014)
pTH8356 		0.928 0.895
NAC012
M00971_2.00 		Arabidopsis thaliana
NYAMGYHANN
NNTDRCKTRN		 PBM
Lindemose et al.(2014)
SND1 		0.928 0.912
MDP0000762302
M02383_2.00 		Malus domestica
NNNAMKHNWN
NWNDMKTNNN		 PBM
Weirauch et al.(2014)
pTH9205 		0.919 0.895
For this family, TFs with SR scores > 0.870 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02370_2.00 NAC/NAM 17 144

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G46770.1 NAC/NAM 17 144

Links

Other NAC/NAM family TFs
Other Arabidopsis thaliana TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra004509 Brassica rapa Bra004509 I 0.970
Bo4g006990 Brassica oleracea Bo4g006990 I 0.970
Bostr.25993s0090 Boechera stricta Bostr.25993s0090 I 0.970
Thhalv10001506m.g Eutrema salsugineum Thhalv10001506m.g I 0.970
Carubv10023503m.g Capsella rubella Carubv10023503m.g I 0.970
Cagra.0050s0024 Capsella grandiflora Cagra.0050s0024 I 0.970
NST1 Arabidopsis lyrata scaffold_403649.1 I 0.970
Bra040486 Brassica rapa Bra040486 I 0.969
Bo4g197330 Brassica oleracea Bo4g197330 I 0.969
gene18636-v1.0-hybrid Fragaria vesca gene18636-v1.0-hybrid I 0.959
MDP0000563165 Malus domestica MDP0000563165 I 0.959
Pm018292 Prunus mume Pm018292 I 0.959
PRUPE_ppa020746mg Prunus persica PRUPE_ppa020746mg I 0.959
Cla006806 Citrullus lanatus Cla006806 I 0.958
Cucsa.120870 Cucumis sativus Cucsa.120870 I 0.958
Bra003478 Brassica rapa Bra003478 I 0.958
TCM_005047 Theobroma cacao TCM_005047 I 0.958
Gorai.007G112500 Gossypium raimondii Gorai.007G112500 I 0.958
27964.m000369 Ricinus communis 27964.m000369 I 0.958
Bra007640 Brassica rapa Bra007640 I 0.958
Bostr.13158s0196 Boechera stricta Bostr.13158s0196 I 0.958
cassava33021.m1 Manihot esculenta cassava33021.m1 I 0.957
Lus10002687.g Linum usitatissimum Lus10002687.g I 0.956
Lus10030205.g Linum usitatissimum Lus10030205.g I 0.956
Gorai.001G150800 Gossypium raimondii Gorai.001G150800 I 0.955
NST2 Arabidopsis lyrata scaffold_503455.1 I 0.955
Ca_22426 Cicer arietinum Ca_22426 I 0.954
SapurV1A.0162s0220 Salix purpurea SapurV1A.0162s0220 I 0.954
GLYMA07G05660 Glycine max GLYMA07G05660 I 0.954
POPTR_0014s10060 Populus trichocarpa POPTR_0014s10060 I 0.954
LjSGA_027787.1 Lotus japonicus LjSGA_027787.1 I 0.954
Cagra.0483s0052 Capsella grandiflora Cagra.0483s0052 I 0.954
GLYMA16G02200 Glycine max GLYMA16G02200 I 0.954
Carubv10019223m.g Capsella rubella Carubv10019223m.g I 0.954
MTR_8g024480 Medicago truncatula MTR_8g024480 I 0.954
AMTR_s00113p00077540 Amborella trichopoda AMTR_s00113p00077540 I 0.953
Ca_22425 Cicer arietinum Ca_22425 I 0.953
POPTR_0002s17950 Populus trichocarpa POPTR_0002s17950 I 0.951
orange1.1g015853m.g Citrus sinensis orange1.1g015853m.g I 0.950
Ciclev10024035m.g Citrus clementina Ciclev10024035m.g I 0.950
mgf022455m Mimulus guttatus mgf022455m I 0.949
PK04961.1 Cannabis sativa PK04961.1 I 0.949
ANAC012 Vitis vinifera VIT_02s0025g02710 I 0.948
Cla011508 Citrullus lanatus Cla011508 I 0.947
Cucsa.193460 Cucumis sativus Cucsa.193460 I 0.947
GSMUA_Achr3G12230_001 Musa acuminata GSMUA_Achr3G12230_001 I 0.946
Aquca_037_00272 Aquilegia coerulea Aquca_037_00272 I 0.946
Bo6g079180 Brassica oleracea Bo6g079180 I 0.944
GSMUA_Achr7G05980_001 Musa acuminata GSMUA_Achr7G05980_001 I 0.943
GSMUA_Achr9G24450_001 Musa acuminata GSMUA_Achr9G24450_001 I 0.943
VIT_15s0048g02660 Vitis vinifera VIT_15s0048g02660 I 0.943
PDK_20s1408241g001 Phoenix dactylifera PDK_20s1408241g001 I 0.941
NAC066 Arabidopsis thaliana AT3G61910 D 0.940
Sb10g002120 Sorghum bicolor Sb10g002120 I 0.939
GRMZM2G171395 Zea mays GRMZM2G171395 I 0.939
Si006565m.g Setaria italica Si006565m.g I 0.939
GSMUA_AchrUn_randomG21980_001 Musa acuminata GSMUA_AchrUn_randomG21980_001 I 0.938
Gorai.008G130300 Gossypium raimondii Gorai.008G130300 I 0.937
SapurV1A.0003s0530 Salix purpurea SapurV1A.0003s0530 I 0.936
GRMZM2G069047 Zea mays GRMZM2G069047 I 0.936
cassava32649.m1 Manihot esculenta cassava32649.m1 I 0.935
OMERI08G01360 Oryza meridionalis OMERI08G01360 I 0.934
F775_11081 Aegilops tauschii F775_11081 I 0.933
Pavir.J21162 Panicum virgatum Pavir.J21162 I 0.933
Traes_7DL_1AD9A3E8D Triticum aestivum Traes_7DL_1AD9A3E8D I 0.933
Pavir.J20698 Panicum virgatum Pavir.J20698 I 0.933
GRMZM2G092465 Zea mays GRMZM2G092465 I 0.933
MLOC_66924 Hordeum vulgare MLOC_66924 I 0.933
Traes_7AL_B000BC0DD Triticum aestivum Traes_7AL_B000BC0DD I 0.933
Sb07g001550 Sorghum bicolor Sb07g001550 I 0.933
Lus10001664.g Linum usitatissimum Lus10001664.g I 0.932
Eucgr.D01671 Eucalyptus grandis Eucgr.D01671 I 0.932
Lus10017340.g Linum usitatissimum Lus10017340.g I 0.932
gene01881-v1.0-hybrid Fragaria vesca gene01881-v1.0-hybrid I 0.928
Gorai.004G129200 Gossypium raimondii Gorai.004G129200 I 0.928
orange1.1g014260m.g Citrus sinensis orange1.1g014260m.g I 0.928
Thhalv10009336m.g Eutrema salsugineum Thhalv10009336m.g I 0.928
Ciclev10021141m.g Citrus clementina Ciclev10021141m.g I 0.928
Carubv10011900m.g Capsella rubella Carubv10011900m.g I 0.928
30068.m002591 Ricinus communis 30068.m002591 I 0.928
cassava42638.valid.m1 Manihot esculenta cassava42638.valid.m1 I 0.928
Cagra.14513s0001 Capsella grandiflora Cagra.14513s0001 I 0.928
Pm024260 Prunus mume Pm024260 I 0.928
TCM_015621 Theobroma cacao TCM_015621 I 0.928
OS06G0131700 Oryza sativa OS06G0131700 D 0.928
ORUFI08G01170 Oryza rufipogon ORUFI08G01170 I 0.928
OS08G0115800 Oryza sativa OS08G0115800 I 0.928
OMERI06G01850 Oryza meridionalis OMERI06G01850 I 0.928
OGLUM08G01180 Oryza glumaepatula OGLUM08G01180 I 0.928
ORUFI06G01950 Oryza rufipogon ORUFI06G01950 I 0.928
ORGLA08G0004900 Oryza glaberrima ORGLA08G0004900 I 0.928
OPUNC06G01800 Oryza punctata OPUNC06G01800 I 0.928
OPUNC08G01110 Oryza punctata OPUNC08G01110 I 0.928
ORGLA06G0019800 Oryza glaberrima ORGLA06G0019800 I 0.928
ONIVA06G02290 Oryza nivara ONIVA06G02290 I 0.928
ONIVA08G01130 Oryza nivara ONIVA08G01130 I 0.928
PRUPE_ppa006801mg Prunus persica PRUPE_ppa006801mg I 0.928
ANAC012 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002619 I 0.928
BGIOSGA027883 Oryza indica BGIOSGA027883 I 0.928
BGIOSGA022006 Oryza indica BGIOSGA022006 I 0.928
NAC012 Arabidopsis thaliana AT1G32770 D 0.928
LPERR06G01790 Leersia perrieri LPERR06G01790 I 0.928
OB06G11970 Oryza brachyantha OB06G11970 I 0.928
OBART06G01950 Oryza barthii OBART06G01950 I 0.928
OGLUM06G01950 Oryza glumaepatula OGLUM06G01950 I 0.928
OB08G11290 Oryza brachyantha OB08G11290 I 0.928
OBART08G01110 Oryza barthii OBART08G01110 I 0.928
Bo5g049360 Brassica oleracea Bo5g049360 I 0.927
Bostr.3359s0081 Boechera stricta Bostr.3359s0081 I 0.927
LPERR08G01440 Leersia perrieri LPERR08G01440 I 0.926
Pavir.J07835 Panicum virgatum Pavir.J07835 I 0.925
Lus10033239.g Linum usitatissimum Lus10033239.g I 0.925
Gorai.003G077700 Gossypium raimondii Gorai.003G077700 I 0.925
Bra023288 Brassica rapa Bra023288 I 0.925
Lus10008271.g Linum usitatissimum Lus10008271.g I 0.925
cassava45846.m1 Manihot esculenta cassava45846.m1 I 0.925
Bo5g086900 Brassica oleracea Bo5g086900 I 0.921
PK22182.1 Cannabis sativa PK22182.1 I 0.921
Gorai.006G205300 Gossypium raimondii Gorai.006G205300 I 0.921
POPTR_0011s15640 Populus trichocarpa POPTR_0011s15640 I 0.921
Eucgr.E01053 Eucalyptus grandis Eucgr.E01053 I 0.921
Bra010183 Brassica rapa Bra010183 I 0.921
SapurV1A.0131s0060 Salix purpurea SapurV1A.0131s0060 I 0.921
POPTR_0001s45250 Populus trichocarpa POPTR_0001s45250 I 0.920
SapurV1A.2717s0010 Salix purpurea SapurV1A.2717s0010 I 0.920
SapurV1A.0941s0070 Salix purpurea SapurV1A.0941s0070 I 0.920
Gorai.008G259700 Gossypium raimondii Gorai.008G259700 I 0.920
MDP0000762302 Malus domestica MDP0000762302 D 0.919
MDP0000140229 Malus domestica MDP0000140229 I 0.919
BRADI3G13727 Brachypodium distachyon BRADI3G13727 I 0.917
PGSC0003DMG400011268 Solanum tuberosum PGSC0003DMG400011268 I 0.916
Solyc10g005010.2 Solanum lycopersicum Solyc10g005010.2 I 0.916
evm.TU.supercontig_37.89 Carica papaya evm.TU.supercontig_37.89 I 0.915
gene18635-v1.0-hybrid Fragaria vesca gene18635-v1.0-hybrid I 0.913
GRMZM2G091490 Zea mays GRMZM2G091490 I 0.909
GSMUA_Achr2G20020_001 Musa acuminata GSMUA_Achr2G20020_001 I 0.901
GSMUA_Achr10G14400_001 Musa acuminata GSMUA_Achr10G14400_001 I 0.897
Aquca_030_00252 Aquilegia coerulea Aquca_030_00252 I 0.896
AMTR_s00068p00207380 Amborella trichopoda AMTR_s00068p00207380 I 0.892
GRMZM2G104074 Zea mays GRMZM2G104074 I 0.888
GRMZM2G041746 Zea mays GRMZM2G041746 I 0.888
Sb10g020860 Sorghum bicolor Sb10g020860 I 0.888
OB02G19660 Oryza brachyantha OB02G19660 I 0.887
Traes_7DL_AD6EAD1A6 Triticum aestivum Traes_7DL_AD6EAD1A6 I 0.886
BRADI3G09520 Brachypodium distachyon BRADI3G09520 I 0.886
Traes_7AL_46F73E667 Triticum aestivum Traes_7AL_46F73E667 I 0.886
MLOC_17128 Hordeum vulgare MLOC_17128 I 0.886
TRIUR3_14210 Triticum urartu TRIUR3_14210 I 0.886
LPERR02G09170 Leersia perrieri LPERR02G09170 I 0.886
Traes_7DL_AD6EAD1A61 Triticum aestivum Traes_7DL_AD6EAD1A61 I 0.886
F775_42361 Aegilops tauschii F775_42361 I 0.886
BRADI1G38730 Brachypodium distachyon BRADI1G38730 I 0.884
Sb04g009180 Sorghum bicolor Sb04g009180 I 0.883
Lus10032238.g Linum usitatissimum Lus10032238.g I 0.883
Pavir.J05053 Panicum virgatum Pavir.J05053 I 0.883
Si007822m.g Setaria italica Si007822m.g I 0.883
Pavir.Da01009 Panicum virgatum Pavir.Da01009 I 0.883
Si017641m.g Setaria italica Si017641m.g I 0.880
Lus10009939.g Linum usitatissimum Lus10009939.g I 0.879
Pavir.Ab01037 Panicum virgatum Pavir.Ab01037 I 0.879
TRIUR3_14543 Triticum urartu TRIUR3_14543 I 0.879
F775_21627 Aegilops tauschii F775_21627 I 0.879
Pavir.Aa02770 Panicum virgatum Pavir.Aa02770 I 0.879
TRIUR3_27911 Triticum urartu TRIUR3_27911 I 0.877
Lus10030143.g Linum usitatissimum Lus10030143.g I 0.876
GLYMA19G44890 Glycine max GLYMA19G44890 I 0.876
OPUNC02G09610 Oryza punctata OPUNC02G09610 I 0.872