orange1.1g043029m.g (Citrus sinensis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 orange1.1g043029m.g T009289_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.785 0.717
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.785 0.717
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.763 0.679
ERF106
M01628_2.00 		Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN		 PBM
Weirauch et al.(2014)
pTH7426 		0.748 0.642
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.740 0.717
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.740 0.717
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.736 0.642
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.736 0.642
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.736 0.642
ERF104
M06682_2.00 		Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN		 Dap-seq
OMalley et al.(2016)
ERF104_col_a 		0.729 0.623
ERF104
M06683_2.00 		Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV		 Dap-seq
OMalley et al.(2016)
ERF104_colamp_a 		0.729 0.623
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.725 0.698
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.723 0.698
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.723 0.698
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.723 0.698
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.721 0.679
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.721 0.679
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.721 0.679
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.720 0.736
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.719 0.660
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.718 0.679
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.718 0.679
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.718 0.679
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.714 0.679
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.714 0.660
RAP2-3
M01050_2.00 		Arabidopsis thaliana
CGCCGCCR
YGGCGGCG		 PBM
Sullivan et al.(2014)
pTH8811 		0.713 0.642
RAP2-3
M00847_2.00 		Arabidopsis thaliana
NMGCCGCCDN
NHGGCGGCKN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.3 		0.713 0.642
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.712 0.642
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.709 0.623
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.699 0.642
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.699 0.642
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.699 0.642
ERF7
M01617_2.00 		Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN		 PBM
Weirauch et al.(2014)
pTH7606 		0.698 0.623
ERF7
M06620_2.00 		Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR		 Dap-seq
OMalley et al.(2016)
ERF7_col_a 		0.698 0.623
ERF7
M06621_2.00 		Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF7_colamp_a 		0.698 0.623
ERF15
M00718_2.00 		Arabidopsis thaliana
NGSCGSCB
VGSCGSCN		 PBM
Chang et al.(2013)
pTH7336 		0.697 0.679
ERF15
M06604_2.00 		Arabidopsis thaliana
NNNHNNHDBMGCCGCCDY
RHGGCGGCKVHDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF15_colamp_a 		0.697 0.679
ERF15
M06605_2.00 		Arabidopsis thaliana
NNYHDYMGCCGCCRY
RYGGCGGCKRHDRNN		 Dap-seq
OMalley et al.(2016)
ERF15_col 		0.697 0.679
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.695 0.679
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.694 0.642
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.694 0.642
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.694 0.642
ERF091
M06638_2.00 		Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN		 Dap-seq
OMalley et al.(2016)
AT4G18450_col_a 		0.689 0.642
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.687 0.604
Q2TN80_WHEAT
M09715_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_02 		0.683 0.623
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.681 0.660
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.680 0.660
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.680 0.660
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.680 0.660
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.680 0.660
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.680 0.660
EREBP1
M09708_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EREBP1_01 		0.678 0.604
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.677 0.623
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.677 0.623
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.677 0.642
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g043029m AP2 28 81

Links

Other AP2 family TFs
Other Citrus sinensis TFs

1510 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GPRI1 Arabidopsis thaliana AT2G20570 D
AMTR_s00058p00133630 Amborella trichopoda AMTR_s00058p00133630 I
GLK2 Arabidopsis thaliana AT5G44190 I
BGIOSGA002040 Oryza indica BGIOSGA002040 I
BGIOSGA022875 Oryza indica BGIOSGA022875 I
Bo7g003410 Brassica oleracea Bo7g003410 I
Bo7g067200 Brassica oleracea Bo7g067200 I
Bo8g102300 Brassica oleracea Bo8g102300 I
Bra031129 Brassica rapa Bra031129 I
Bra033726 Brassica rapa Bra033726 I
Bra036482 Brassica rapa Bra036482 I
BRADI1G43710 Brachypodium distachyon BRADI1G43710 I
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I
F775_20285 Aegilops tauschii F775_20285 I
GPRI1 Arabidopsis lyrata fgenesh2_kg.3__3588__AT2G20570.1 I
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I
GLYMA06G44330 Glycine max GLYMA06G44330 I
GLYMA12G13430 Glycine max GLYMA12G13430 I
GLYMA12G33430 Glycine max GLYMA12G33430 I
GLYMA13G37010 Glycine max GLYMA13G37010 I
GRMZM2G026833 Zea mays GRMZM2G026833 I
GRMZM2G087804 Zea mays GRMZM2G087804 I
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I
GSMUA_Achr6G05850_001 Musa acuminata GSMUA_Achr6G05850_001 I
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I
LPERR01G08320 Leersia perrieri LPERR01G08320 I
LPERR06G12880 Leersia perrieri LPERR06G12880 I
MLOC_43537 Hordeum vulgare MLOC_43537 I
MLOC_65876 Hordeum vulgare MLOC_65876 I
MTR_2g090675 Medicago truncatula MTR_2g090675 I
MTR_4g078810 Medicago truncatula MTR_4g078810 I
OB01G18980 Oryza brachyantha OB01G18980 I
OB06G22250 Oryza brachyantha OB06G22250 I
OBART03G02540 Oryza barthii OBART03G02540 I
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I
OGLUM06G15080 Oryza glumaepatula OGLUM06G15080 I
OMERI01G08840 Oryza meridionalis OMERI01G08840 I
OMERI06G15340 Oryza meridionalis OMERI06G15340 I
ONIVA01G11450 Oryza nivara ONIVA01G11450 I
ONIVA06G16920 Oryza nivara ONIVA06G16920 I
OPUNC01G08680 Oryza punctata OPUNC01G08680 I
OPUNC06G13180 Oryza punctata OPUNC06G13180 I
ORGLA01G0079000 Oryza glaberrima ORGLA01G0079000 I
ORGLA06G0126200 Oryza glaberrima ORGLA06G0126200 I
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I
ORUFI06G15000 Oryza rufipogon ORUFI06G15000 I
GLK2 Oryza sativa OS01G0239000 I
GLK1 Oryza sativa OS06G0348800 I
PGSC0003DMG400009378 Solanum tuberosum PGSC0003DMG400009378 I
PGSC0003DMG400021857 Solanum tuberosum PGSC0003DMG400021857 I
POPTR_0007s01230 Populus trichocarpa POPTR_0007s01230 I
POPTR_0017s04720 Populus trichocarpa POPTR_0017s04720 I
PRUPE_ppa014599mg Prunus persica PRUPE_ppa014599mg I
Sb03g000400 Sorghum bicolor Sb03g000400 I
Sb10g008400 Sorghum bicolor Sb10g008400 I
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I
Si001336m.g Setaria italica Si001336m.g I
Si006400m.g Setaria italica Si006400m.g I
Solyc07g053630.2 Solanum lycopersicum Solyc07g053630.2 I
TCM_008193 Theobroma cacao TCM_008193 I
TRAES3BF062500050CFD_g Triticum aestivum TRAES3BF062500050CFD_g I
Traes_7DL_58DDB90E3 Triticum aestivum Traes_7DL_58DDB90E3 I
TRIUR3_15856 Triticum urartu TRIUR3_15856 I
GPRI1 Vitis vinifera VIT_12s0028g03100 I
Ca_02452 Cicer arietinum Ca_02452 I
Ca_11268 Cicer arietinum Ca_11268 I
Cla003791 Citrullus lanatus Cla003791 I
Pm014123 Prunus mume Pm014123 I
29983.m003131 Ricinus communis 29983.m003131 I
cassava43649.valid.m1 Manihot esculenta cassava43649.valid.m1 I
cassava43650.valid.m1 Manihot esculenta cassava43650.valid.m1 I
cassava9823.m1 Manihot esculenta cassava9823.m1 I
Cucsa.087530 Cucumis sativus Cucsa.087530 I
estExt_gwp_gw1.C_310256 Physcomitrella patens estExt_gwp_gw1.C_310256 I
fgenesh1_pm.scaffold_311000005 Physcomitrella patens fgenesh1_pm.scaffold_311000005 I
mgf007181m Mimulus guttatus mgf007181m I
mgf012846m Mimulus guttatus mgf012846m I
mgf014879m Mimulus guttatus mgf014879m I
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I
Aquca_051_00026 Aquilegia coerulea Aquca_051_00026 I
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I
Bostr.7903s0106 Boechera stricta Bostr.7903s0106 I
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I
Cagra.2516s0014 Capsella grandiflora Cagra.2516s0014 I
Carubv10014114m.g Capsella rubella Carubv10014114m.g I
Carubv10026528m.g Capsella rubella Carubv10026528m.g I
Ciclev10007648m.g Citrus clementina Ciclev10007648m.g I
Ciclev10015266m.g Citrus clementina Ciclev10015266m.g I
Eucgr.A01857 Eucalyptus grandis Eucgr.A01857 I
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I
gene17750-v1.0-hybrid Fragaria vesca gene17750-v1.0-hybrid I
Gorai.002G020300 Gossypium raimondii Gorai.002G020300 I
Gorai.008G155000 Gossypium raimondii Gorai.008G155000 I
Gorai.012G126600 Gossypium raimondii Gorai.012G126600 I
Lus10018649.g Linum usitatissimum Lus10018649.g I
Lus10033642.g Linum usitatissimum Lus10033642.g I
Lus10039883.g Linum usitatissimum Lus10039883.g I
MDP0000225179 Malus domestica MDP0000225179 I
MDP0000526864 Malus domestica MDP0000526864 I
orange1.1g005719m.g Citrus sinensis orange1.1g005719m.g I
orange1.1g013528m.g Citrus sinensis orange1.1g013528m.g I
Pavir.Db01285 Panicum virgatum Pavir.Db01285 I
Pavir.Ea00014 Panicum virgatum Pavir.Ea00014 I
Pavir.Eb00063 Panicum virgatum Pavir.Eb00063 I
Pavir.J11422 Panicum virgatum Pavir.J11422 I
SapurV1A.0118s0260 Salix purpurea SapurV1A.0118s0260 I
SapurV1A.0693s0070 Salix purpurea SapurV1A.0693s0070 I
SapurV1A.1950s0030 Salix purpurea SapurV1A.1950s0030 I
Thhalv10001986m.g Eutrema salsugineum Thhalv10001986m.g I
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I
PK27491.1 Cannabis sativa PK27491.1 I
chr3.CM0160.680.nd Lotus japonicus chr3.CM0160.680.nd I
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I
PDK_20s1662851g001 Phoenix dactylifera PDK_20s1662851g001 I