LjT43F20.80.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 LjT43F20.80.nd T010330_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.686 0.840
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.686 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjT43F20.80.nd AP2 63 114

Links

Other AP2 family TFs
Other Lotus japonicus TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TINY Arabidopsis thaliana AT5G25810 D 0.686
Bo2g010530 Brassica oleracea Bo2g010530 I 0.677
Bo7g095710 Brassica oleracea Bo7g095710 I 0.686
Bra009862 Brassica rapa Bra009862 I 0.686
Bra023332 Brassica rapa Bra023332 I 0.678
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.734
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.728
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.722
POPTR_0006s25500 Populus trichocarpa POPTR_0006s25500 I 0.714
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.687
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.686
MDP0000790788 Malus domestica MDP0000790788 I 0.702
SapurV1A.0272s0090 Salix purpurea SapurV1A.0272s0090 I 0.714
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I 0.689
BRADI5G17630 Brachypodium distachyon BRADI5G17630 N 0.724