estExt_fgenesh4_pg.C_2950001 (Volvox carteri)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 estExt_fgenesh4_pg.C_2950001 T028091_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh4_pg.C_2950001 BED ZF 2 50

Links

Other BED ZF family TFs
Other Volvox carteri TFs

1 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.004G063200 Gossypium raimondii Gorai.004G063200 N
Cla005525 Citrullus lanatus Cla005525 N
Pm014866 Prunus mume Pm014866 N
29872.m000537 Ricinus communis 29872.m000537 N
cassava29451.valid.m1 Manihot esculenta cassava29451.valid.m1 N
Cucsa.180010 Cucumis sativus Cucsa.180010 N
Aquca_030_00364 Aquilegia coerulea Aquca_030_00364 N
Ciclev10011732m.g Citrus clementina Ciclev10011732m.g N
Eucgr.A00903 Eucalyptus grandis Eucgr.A00903 N
evm.TU.supercontig_8.295 Carica papaya evm.TU.supercontig_8.295 N
gene24339-v1.0-hybrid Fragaria vesca gene24339-v1.0-hybrid N
Ca_11130 Cicer arietinum Ca_11130 N
MDP0000269044 Malus domestica MDP0000269044 N
MDP0000287321 Malus domestica MDP0000287321 N
MDP0000289554 Malus domestica MDP0000289554 N
orange1.1g013903m.g Citrus sinensis orange1.1g013903m.g N
Pavir.Ba00637 Panicum virgatum Pavir.Ba00637 N
SapurV1A.0154s0180 Salix purpurea SapurV1A.0154s0180 N
SapurV1A.0295s0450 Salix purpurea SapurV1A.0295s0450 N
PK21090.1 Cannabis sativa PK21090.1 N
chr3.CM0460.360.nd Lotus japonicus chr3.CM0460.360.nd N
ORGLA07G0244600 Oryza glaberrima ORGLA07G0244600 N
GLYMA11G10220 Glycine max GLYMA11G10220 N
LPERR07G16410 Leersia perrieri LPERR07G16410 N
MTR_4g076020 Medicago truncatula MTR_4g076020 N
OBART07G19080 Oryza barthii OBART07G19080 N
OGLUM07G18870 Oryza glumaepatula OGLUM07G18870 N
OMERI07G15800 Oryza meridionalis OMERI07G15800 N
ONIVA07G17430 Oryza nivara ONIVA07G17430 N
OPUNC07G17970 Oryza punctata OPUNC07G17970 N
OPUNC07G18000 Oryza punctata OPUNC07G18000 N
BGIOSGA025964 Oryza indica BGIOSGA025964 N
ORUFI07G19860 Oryza rufipogon ORUFI07G19860 N
OS07G0567700 Oryza sativa OS07G0567700 N
PGSC0003DMG400011742 Solanum tuberosum PGSC0003DMG400011742 N
POPTR_0006s02220 Populus trichocarpa POPTR_0006s02220 N
POPTR_0016s02030 Populus trichocarpa POPTR_0016s02030 N
PRUPE_ppa005742mg Prunus persica PRUPE_ppa005742mg N
Solyc07g043330.1 Solanum lycopersicum Solyc07g043330.1 N
TCM_002021 Theobroma cacao TCM_002021 N
VIT_03s0017g01660 Vitis vinifera VIT_03s0017g01660 N