POPTR_0006s15310 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0006s15310 T043828_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK15505.1
M01125_2.00 		Cannabis sativa
NRCACGTGYN
NRCACGTGYN		 PBM
Lambert et al.(2019)
pTH10268 		0.881 0.755
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s15310.1 bHLH 218 266

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK15505.1 Cannabis sativa PK15505.1 D 0.881
Eucgr.C03476 Eucalyptus grandis Eucgr.C03476 I 0.892
Al_scaffold_0008_2143 Arabidopsis lyrata Al_scaffold_0008_2143 I 0.868
Cla017100 Citrullus lanatus Cla017100 I 0.892
Pm027191 Prunus mume Pm027191 I 0.868
29912.m005337 Ricinus communis 29912.m005337 I 0.914
cassava25701.m1 Manihot esculenta cassava25701.m1 I 0.887
cassava46879.m1 Manihot esculenta cassava46879.m1 I 0.914
Cucsa.117060 Cucumis sativus Cucsa.117060 I 0.892
mgf018190m Mimulus guttatus mgf018190m I 0.868
Aquca_020_00438 Aquilegia coerulea Aquca_020_00438 I 0.857
Bostr.26833s0565 Boechera stricta Bostr.26833s0565 I 0.868
Cagra.1569s0004 Capsella grandiflora Cagra.1569s0004 I 0.868
Carubv10026331m.g Capsella rubella Carubv10026331m.g I 0.868
Ciclev10007937m.g Citrus clementina Ciclev10007937m.g I 0.892
VIT_11s0016g02070 Vitis vinifera VIT_11s0016g02070 I 0.892
gene12658-v1.0-hybrid Fragaria vesca gene12658-v1.0-hybrid I 0.868
Gorai.001G012400 Gossypium raimondii Gorai.001G012400 I 0.849
MDP0000119495 Malus domestica MDP0000119495 I 0.893
MDP0000252899 Malus domestica MDP0000252899 I 0.893
MDP0000782908 Malus domestica MDP0000782908 I 0.892
orange1.1g008967m.g Citrus sinensis orange1.1g008967m.g I 0.892
Pavir.Ca00825 Panicum virgatum Pavir.Ca00825 I 0.893
Pavir.J01638 Panicum virgatum Pavir.J01638 I 0.893
SapurV1A.0108s0270 Salix purpurea SapurV1A.0108s0270 I 0.884
Thhalv10013360m.g Eutrema salsugineum Thhalv10013360m.g I 0.868
LjT02N03.60.nd Lotus japonicus LjT02N03.60.nd I 0.853
PDK_20s1427741g002 Phoenix dactylifera PDK_20s1427741g002 I 0.859
OBART05G06380 Oryza barthii OBART05G06380 I 0.882
AMTR_s00064p00208400 Amborella trichopoda AMTR_s00064p00208400 I 0.880
AT5G56960 Arabidopsis thaliana AT5G56960 I 0.868
BGIOSGA033976 Oryza indica BGIOSGA033976 I 0.882
Bo2g032920 Brassica oleracea Bo2g032920 I 0.857
Bra035639 Brassica rapa Bra035639 I 0.868
GLYMA09G07391 Glycine max GLYMA09G07391 I 0.853
GLYMA15G18580 Glycine max GLYMA15G18580 I 0.853
GSMUA_Achr6G00900_001 Musa acuminata GSMUA_Achr6G00900_001 I 0.892
LPERR05G05410 Leersia perrieri LPERR05G05410 I 0.882
OB05G15870 Oryza brachyantha OB05G15870 I 0.882
Solyc07g039570.2 Solanum lycopersicum Solyc07g039570.2 I 0.860
OGLUM05G06690 Oryza glumaepatula OGLUM05G06690 I 0.882
ONIVA05G07120 Oryza nivara ONIVA05G07120 I 0.882
OPUNC05G05910 Oryza punctata OPUNC05G05910 I 0.902
ORGLA05G0058200 Oryza glaberrima ORGLA05G0058200 I 0.882
ORUFI05G06870 Oryza rufipogon ORUFI05G06870 I 0.882
OS05G0199800 Oryza sativa OS05G0199800 I 0.882
PGSC0003DMG400000335 Solanum tuberosum PGSC0003DMG400000335 I 0.877
PGSC0003DMG400022043 Solanum tuberosum PGSC0003DMG400022043 I 0.860
PRUPE_ppa020972mg Prunus persica PRUPE_ppa020972mg I 0.868
Si024546m.g Setaria italica Si024546m.g I 0.893
OGLUM01G06710 Oryza glumaepatula OGLUM01G06710 N 0.839
ONIVA01G07090 Oryza nivara ONIVA01G07090 N 0.839
Lus10017152.g Linum usitatissimum Lus10017152.g N 0.843
GRMZM2G175480 Zea mays GRMZM2G175480 N 0.869
BGIOSGA002941 Oryza indica BGIOSGA002941 N 0.839
Sb09g006196 Sorghum bicolor Sb09g006196 N 0.845