PGSC0003DMG400000335 (Solanum tuberosum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 PGSC0003DMG400000335 T043397_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK15505.1
M01125_2.00 		Cannabis sativa
NRCACGTGYN
NRCACGTGYN		 PBM
Lambert et al.(2019)
pTH10268 		0.911 0.816
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400000883 bHLH 534 582
PGSC0003DMT400000884 bHLH 139 187

Links

Other bHLH family TFs
Other Solanum tuberosum TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK15505.1 Cannabis sativa PK15505.1 D 0.911
MDP0000252899 Malus domestica MDP0000252899 I 0.899
MDP0000119495 Malus domestica MDP0000119495 I 0.899
Solyc07g039570.2 Solanum lycopersicum Solyc07g039570.2 I 0.891
PGSC0003DMG400022043 Solanum tuberosum PGSC0003DMG400022043 I 0.891
Cla017100 Citrullus lanatus Cla017100 I 0.878
Cucsa.117060 Cucumis sativus Cucsa.117060 I 0.878
Eucgr.C03476 Eucalyptus grandis Eucgr.C03476 I 0.878
orange1.1g008967m.g Citrus sinensis orange1.1g008967m.g I 0.878
MDP0000782908 Malus domestica MDP0000782908 I 0.878
OPUNC05G05910 Oryza punctata OPUNC05G05910 I 0.878
Ciclev10007937m.g Citrus clementina Ciclev10007937m.g I 0.878
VIT_11s0016g02070 Vitis vinifera VIT_11s0016g02070 I 0.878
GSMUA_Achr6G00900_001 Musa acuminata GSMUA_Achr6G00900_001 I 0.878
29912.m005337 Ricinus communis 29912.m005337 I 0.877
cassava46879.m1 Manihot esculenta cassava46879.m1 I 0.877
POPTR_0006s15310 Populus trichocarpa POPTR_0006s15310 I 0.877
mgf018190m Mimulus guttatus mgf018190m I 0.877
PDK_20s1427741g002 Phoenix dactylifera PDK_20s1427741g002 I 0.867
ONIVA05G07120 Oryza nivara ONIVA05G07120 I 0.858
ORGLA05G0058200 Oryza glaberrima ORGLA05G0058200 I 0.858
BGIOSGA033976 Oryza indica BGIOSGA033976 I 0.858
ORUFI05G06870 Oryza rufipogon ORUFI05G06870 I 0.858
OBART05G06380 Oryza barthii OBART05G06380 I 0.858
GLYMA09G07391 Glycine max GLYMA09G07391 I 0.858
GLYMA15G18580 Glycine max GLYMA15G18580 I 0.858
Pavir.Ca00825 Panicum virgatum Pavir.Ca00825 I 0.858
OS05G0199800 Oryza sativa OS05G0199800 I 0.858
LjT02N03.60.nd Lotus japonicus LjT02N03.60.nd I 0.858
OB05G15870 Oryza brachyantha OB05G15870 I 0.858
Si024546m.g Setaria italica Si024546m.g I 0.858
OGLUM05G06690 Oryza glumaepatula OGLUM05G06690 I 0.858
Pavir.J01638 Panicum virgatum Pavir.J01638 I 0.858
LPERR05G05410 Leersia perrieri LPERR05G05410 I 0.858
Bo2g032920 Brassica oleracea Bo2g032920 I 0.854
AT5G56960 Arabidopsis thaliana AT5G56960 I 0.854
Thhalv10013360m.g Eutrema salsugineum Thhalv10013360m.g I 0.854
Bra035639 Brassica rapa Bra035639 I 0.854
Cagra.1569s0004 Capsella grandiflora Cagra.1569s0004 I 0.854
PRUPE_ppa020972mg Prunus persica PRUPE_ppa020972mg I 0.854
Pm027191 Prunus mume Pm027191 I 0.854
Aquca_020_00438 Aquilegia coerulea Aquca_020_00438 I 0.854
Bostr.26833s0565 Boechera stricta Bostr.26833s0565 I 0.854
gene12658-v1.0-hybrid Fragaria vesca gene12658-v1.0-hybrid I 0.854
Carubv10026331m.g Capsella rubella Carubv10026331m.g I 0.854
Al_scaffold_0008_2143 Arabidopsis lyrata Al_scaffold_0008_2143 I 0.854
cassava25701.m1 Manihot esculenta cassava25701.m1 I 0.853
AMTR_s00064p00208400 Amborella trichopoda AMTR_s00064p00208400 I 0.848
SapurV1A.0108s0270 Salix purpurea SapurV1A.0108s0270 I 0.847
TCM_037645 Theobroma cacao TCM_037645 I 0.846
Gorai.009G031900 Gossypium raimondii Gorai.009G031900 I 0.842