Gorai.013G164100 (Gossypium raimondii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gorai.013G164100 T050123_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH34
M01704_2.00 		Arabidopsis thaliana
VCACGYGH
DCRCGTGB		 PBM
Weirauch et al.(2014)
pTH7212 		0.844 0.725
BHLH34
M06734_2.00 		Arabidopsis thaliana
NNNHNNDNNNNVCACGTGHCN
NGDCACGTGBNNNNHNNDNNN		 Dap-seq
OMalley et al.(2016)
bHLH34_colamp_a 		0.844 0.725
BHLH34
M06735_2.00 		Arabidopsis thaliana
RWRNNNNNCACGTGBNNNNNNNN
NNNNNNNNVCACGTGNNNNNYWY		 Dap-seq
OMalley et al.(2016)
bHLH34_col 		0.844 0.725
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G164100.1 bHLH 77 127
Gorai.013G164100.2 bHLH 75 125

Links

Other bHLH family TFs
Other Gossypium raimondii TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH34 Arabidopsis thaliana AT3G23210 D 0.844
28166.m001054 Ricinus communis 28166.m001054 I 0.856
PK23013.1 Cannabis sativa PK23013.1 I 0.856
cassava24574.valid.m1 Manihot esculenta cassava24574.valid.m1 I 0.856
cassava37031.valid.m1 Manihot esculenta cassava37031.valid.m1 I 0.856
cassava37032.valid.m1 Manihot esculenta cassava37032.valid.m1 I 0.856
Cucsa.267130 Cucumis sativus Cucsa.267130 I 0.856
Cucsa.267170 Cucumis sativus Cucsa.267170 I 0.856
mgf012088m Mimulus guttatus mgf012088m I 0.903
Ciclev10009354m.g Citrus clementina Ciclev10009354m.g I 0.856
Eucgr.F03420 Eucalyptus grandis Eucgr.F03420 I 0.856
evm.TU.supercontig_97.78 Carica papaya evm.TU.supercontig_97.78 I 0.856
gene03303-v1.0-hybrid Fragaria vesca gene03303-v1.0-hybrid I 0.856
gene24654-v1.0-hybrid Fragaria vesca gene24654-v1.0-hybrid I 0.856
Gorai.002G081900 Gossypium raimondii Gorai.002G081900 I 0.914
Lus10011167.g Linum usitatissimum Lus10011167.g I 0.856
Lus10043076.g Linum usitatissimum Lus10043076.g I 0.856
MDP0000264803 Malus domestica MDP0000264803 I 0.856
orange1.1g026599m.g Citrus sinensis orange1.1g026599m.g I 0.856
SapurV1A.0712s0010 Salix purpurea SapurV1A.0712s0010 I 0.856
AMTR_s00009p00175450 Amborella trichopoda AMTR_s00009p00175450 I 0.899
Cla001735 Citrullus lanatus Cla001735 I 0.856
bHLH34 Arabidopsis lyrata fgenesh2_kg.3__2536__AT3G23210.1 I 0.844
GLYMA06G41620 Glycine max GLYMA06G41620 I 0.856
GLYMA12G34300 Glycine max GLYMA12G34300 I 0.845
MTR_2g082640 Medicago truncatula MTR_2g082640 I 0.856
MTR_4g081370 Medicago truncatula MTR_4g081370 I 0.856
PGSC0003DMG400019263 Solanum tuberosum PGSC0003DMG400019263 I 0.879
POPTR_0001s44230 Populus trichocarpa POPTR_0001s44230 I 0.856
POPTR_0011s13580 Populus trichocarpa POPTR_0011s13580 I 0.856
PRUPE_ppa009077mg Prunus persica PRUPE_ppa009077mg I 0.856
Pm029465 Prunus mume Pm029465 I 0.856
Solyc07g064040.2 Solanum lycopersicum Solyc07g064040.2 I 0.914
TCM_020866 Theobroma cacao TCM_020866 I 0.843
TCM_031118 Theobroma cacao TCM_031118 I 0.856
PRUPE_ppa010730mg Prunus persica PRUPE_ppa010730mg I 0.853
Ca_06956 Cicer arietinum Ca_06956 I 0.856
Ca_16355 Cicer arietinum Ca_16355 I 0.856
VIT_19s0014g05100 Vitis vinifera VIT_19s0014g05100 N 0.888
cassava19334.valid.m1 Manihot esculenta cassava19334.valid.m1 N 0.857
SapurV1A.0502s0080 Salix purpurea SapurV1A.0502s0080 N 0.887
SapurV1A.0028s0330 Salix purpurea SapurV1A.0028s0330 N 0.874
GLYMA12G16560 Glycine max GLYMA12G16560 N 0.856
MDP0000323291 Malus domestica MDP0000323291 N 0.853
Lus10020069.g Linum usitatissimum Lus10020069.g N 0.839
Gorai.002G016500 Gossypium raimondii Gorai.002G016500 N 0.840
POPTR_0004s03190 Populus trichocarpa POPTR_0004s03190 N 0.887
POPTR_0011s03360 Populus trichocarpa POPTR_0011s03360 N 0.887
evm.TU.supercontig_81.11 Carica papaya evm.TU.supercontig_81.11 N 0.850
Eucgr.K00871 Eucalyptus grandis Eucgr.K00871 N 0.891