AMTR_s00009p00175450 (Amborella trichopoda)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 AMTR_s00009p00175450 T030476_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH34
M01704_2.00 		Arabidopsis thaliana
VCACGYGH
DCRCGTGB		 PBM
Weirauch et al.(2014)
pTH7212 		0.851 0.780
BHLH34
M06734_2.00 		Arabidopsis thaliana
NNNHNNDNNNNVCACGTGHCN
NGDCACGTGBNNNNHNNDNNN		 Dap-seq
OMalley et al.(2016)
bHLH34_colamp_a 		0.851 0.780
BHLH34
M06735_2.00 		Arabidopsis thaliana
RWRNNNNNCACGTGBNNNNNNNN
NNNNNNNNVCACGTGNNNNNYWY		 Dap-seq
OMalley et al.(2016)
bHLH34_col 		0.851 0.780
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM94918 bHLH 63 112

Links

Other bHLH family TFs
Other Amborella trichopoda TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc07g064040.2 Solanum lycopersicum Solyc07g064040.2 I 0.899
mgf012088m Mimulus guttatus mgf012088m I 0.899
Gorai.002G081900 Gossypium raimondii Gorai.002G081900 I 0.899
Gorai.013G164100 Gossypium raimondii Gorai.013G164100 I 0.899
POPTR_0004s03190 Populus trichocarpa POPTR_0004s03190 N 0.889
POPTR_0011s03360 Populus trichocarpa POPTR_0011s03360 N 0.889
SapurV1A.0502s0080 Salix purpurea SapurV1A.0502s0080 N 0.889
Eucgr.K00871 Eucalyptus grandis Eucgr.K00871 N 0.882
SapurV1A.0028s0330 Salix purpurea SapurV1A.0028s0330 N 0.876
VIT_19s0014g05100 Vitis vinifera VIT_19s0014g05100 N 0.872
PGSC0003DMG400019263 Solanum tuberosum PGSC0003DMG400019263 I 0.864
cassava19334.valid.m1 Manihot esculenta cassava19334.valid.m1 N 0.859
TCM_020866 Theobroma cacao TCM_020866 I 0.856
BHLH34 Arabidopsis thaliana AT3G23210 D 0.851
bHLH34 Arabidopsis lyrata fgenesh2_kg.3__2536__AT3G23210.1 I 0.851
PRUPE_ppa010730mg Prunus persica PRUPE_ppa010730mg I 0.844
MDP0000323291 Malus domestica MDP0000323291 N 0.844
GLYMA06G41620 Glycine max GLYMA06G41620 I 0.841
GLYMA12G16560 Glycine max GLYMA12G16560 N 0.841
GLYMA12G34300 Glycine max GLYMA12G34300 I 0.841
MTR_2g082640 Medicago truncatula MTR_2g082640 I 0.841
MTR_4g081370 Medicago truncatula MTR_4g081370 I 0.841
POPTR_0001s44230 Populus trichocarpa POPTR_0001s44230 I 0.841
POPTR_0011s13580 Populus trichocarpa POPTR_0011s13580 I 0.841
PRUPE_ppa009077mg Prunus persica PRUPE_ppa009077mg I 0.841
TCM_031118 Theobroma cacao TCM_031118 I 0.841
Ca_06956 Cicer arietinum Ca_06956 I 0.841
Ca_16355 Cicer arietinum Ca_16355 I 0.841
Cla001735 Citrullus lanatus Cla001735 I 0.841
Pm029465 Prunus mume Pm029465 I 0.841
28166.m001054 Ricinus communis 28166.m001054 I 0.841
cassava24574.valid.m1 Manihot esculenta cassava24574.valid.m1 I 0.841
cassava37031.valid.m1 Manihot esculenta cassava37031.valid.m1 I 0.841
cassava37032.valid.m1 Manihot esculenta cassava37032.valid.m1 I 0.841
Cucsa.267130 Cucumis sativus Cucsa.267130 I 0.841
Cucsa.267170 Cucumis sativus Cucsa.267170 I 0.841
Ciclev10009354m.g Citrus clementina Ciclev10009354m.g I 0.841
Eucgr.F03420 Eucalyptus grandis Eucgr.F03420 I 0.841
evm.TU.supercontig_81.11 Carica papaya evm.TU.supercontig_81.11 N 0.841
evm.TU.supercontig_97.78 Carica papaya evm.TU.supercontig_97.78 I 0.841
gene03303-v1.0-hybrid Fragaria vesca gene03303-v1.0-hybrid I 0.841
gene24654-v1.0-hybrid Fragaria vesca gene24654-v1.0-hybrid I 0.841
Lus10011167.g Linum usitatissimum Lus10011167.g I 0.841
Lus10020069.g Linum usitatissimum Lus10020069.g N 0.841
Lus10043076.g Linum usitatissimum Lus10043076.g I 0.841
MDP0000264803 Malus domestica MDP0000264803 I 0.841
orange1.1g026599m.g Citrus sinensis orange1.1g026599m.g I 0.841
SapurV1A.0712s0010 Salix purpurea SapurV1A.0712s0010 I 0.841
PK23013.1 Cannabis sativa PK23013.1 I 0.841