cassava24574.valid.m1 (Manihot esculenta)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 cassava24574.valid.m1 T048004_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ILR3
M01714_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH7211 		0.886 0.827
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava24574.valid.m1 bHLH 74 125

Links

Other bHLH family TFs
Other Manihot esculenta TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA06G41620 Glycine max GLYMA06G41620 I 0.914
MTR_2g082640 Medicago truncatula MTR_2g082640 I 0.914
MTR_4g081370 Medicago truncatula MTR_4g081370 I 0.914
POPTR_0001s44230 Populus trichocarpa POPTR_0001s44230 I 0.914
POPTR_0011s13580 Populus trichocarpa POPTR_0011s13580 I 0.914
PRUPE_ppa009077mg Prunus persica PRUPE_ppa009077mg I 0.914
TCM_031118 Theobroma cacao TCM_031118 I 0.914
Ca_06956 Cicer arietinum Ca_06956 I 0.914
Ca_16355 Cicer arietinum Ca_16355 I 0.914
Cla001735 Citrullus lanatus Cla001735 I 0.914
Pm029465 Prunus mume Pm029465 I 0.914
28166.m001054 Ricinus communis 28166.m001054 I 0.914
cassava37031.valid.m1 Manihot esculenta cassava37031.valid.m1 I 0.914
cassava37032.valid.m1 Manihot esculenta cassava37032.valid.m1 I 0.914
Cucsa.267130 Cucumis sativus Cucsa.267130 I 0.914
Cucsa.267170 Cucumis sativus Cucsa.267170 I 0.914
Ciclev10009354m.g Citrus clementina Ciclev10009354m.g I 0.914
Eucgr.F03420 Eucalyptus grandis Eucgr.F03420 I 0.914
evm.TU.supercontig_97.78 Carica papaya evm.TU.supercontig_97.78 I 0.914
gene03303-v1.0-hybrid Fragaria vesca gene03303-v1.0-hybrid I 0.914
gene24654-v1.0-hybrid Fragaria vesca gene24654-v1.0-hybrid I 0.914
Lus10011167.g Linum usitatissimum Lus10011167.g I 0.914
Lus10043076.g Linum usitatissimum Lus10043076.g I 0.914
MDP0000264803 Malus domestica MDP0000264803 I 0.914
orange1.1g026599m.g Citrus sinensis orange1.1g026599m.g I 0.914
SapurV1A.0712s0010 Salix purpurea SapurV1A.0712s0010 I 0.914
PK23013.1 Cannabis sativa PK23013.1 I 0.914
PRUPE_ppa010730mg Prunus persica PRUPE_ppa010730mg I 0.911
GLYMA12G34300 Glycine max GLYMA12G34300 I 0.903
VIT_12s0059g02650 Vitis vinifera VIT_12s0059g02650 I 0.891
ILR3 Arabidopsis thaliana AT5G54680 D 0.886
Bra002964 Brassica rapa Bra002964 I 0.886
Bra022738 Brassica rapa Bra022738 I 0.886
ILR3 Arabidopsis lyrata fgenesh2_kg.8__1365__AT5G54680.1 I 0.886
Bostr.26833s0797 Boechera stricta Bostr.26833s0797 I 0.886
Cagra.1629s0040 Capsella grandiflora Cagra.1629s0040 I 0.886
Carubv10026758m.g Capsella rubella Carubv10026758m.g I 0.886
Thhalv10014564m.g Eutrema salsugineum Thhalv10014564m.g I 0.886
e_gw1.229.33.1 Physcomitrella patens e_gw1.229.33.1 I 0.885
estExt_gwp_gw1.C_2460032 Physcomitrella patens estExt_gwp_gw1.C_2460032 I 0.885
fgenesh1_pg.scaffold_13000185 Physcomitrella patens fgenesh1_pg.scaffold_13000185 I 0.885
mgf009119m Mimulus guttatus mgf009119m I 0.879
Aquca_005_00425 Aquilegia coerulea Aquca_005_00425 I 0.878
GLYMA13G36260 Glycine max GLYMA13G36260 I 0.876
Bra029011 Brassica rapa Bra029011 I 0.875
SELMODRAFT_165311 Selaginella moellendorffii SELMODRAFT_165311 I 0.872
SELMODRAFT_165556 Selaginella moellendorffii SELMODRAFT_165556 I 0.872
TCM_030082 Theobroma cacao TCM_030082 I 0.872
GSMUA_Achr8G33180_001 Musa acuminata GSMUA_Achr8G33180_001 I 0.870
Bo3g021940 Brassica oleracea Bo3g021940 I 0.866
Ciclev10016381m.g Citrus clementina Ciclev10016381m.g N 0.864
orange1.1g026646m.g Citrus sinensis orange1.1g026646m.g N 0.864
AMTR_s00029p00112130 Amborella trichopoda AMTR_s00029p00112130 N 0.860
VIT_00s0532g00050 Vitis vinifera VIT_00s0532g00050 N 0.860
PDK_20s1322801g004 Phoenix dactylifera PDK_20s1322801g004 N 0.860
GLYMA12G16560 Glycine max GLYMA12G16560 N 0.856
Solyc07g064040.2 Solanum lycopersicum Solyc07g064040.2 I 0.856
Gorai.002G081900 Gossypium raimondii Gorai.002G081900 I 0.856
Gorai.013G164100 Gossypium raimondii Gorai.013G164100 I 0.856
chr3.CM0155.80.nd Lotus japonicus chr3.CM0155.80.nd N 0.856
MDP0000323291 Malus domestica MDP0000323291 N 0.853
AMTR_s00098p00170370 Amborella trichopoda AMTR_s00098p00170370 N 0.849
mgf012088m Mimulus guttatus mgf012088m I 0.845
GLYMA15G06803 Glycine max GLYMA15G06803 I 0.844
GLYMA15G06860 Glycine max GLYMA15G06860 I 0.844
SapurV1A.0535s0060 Salix purpurea SapurV1A.0535s0060 N 0.844
SapurV1A.3390s0010 Salix purpurea SapurV1A.3390s0010 N 0.844
AMTR_s00009p00175450 Amborella trichopoda AMTR_s00009p00175450 I 0.841
Gorai.002G016500 Gossypium raimondii Gorai.002G016500 N 0.840