fgenesh1_pg.scaffold_13000185 (Physcomitrella patens)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh1_pg.scaffold_13000185 T048521_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ILR3
M01714_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH7211 		0.857 0.745
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_13000185 bHLH 39 89

Links

Other bHLH family TFs
Other Physcomitrella patens TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.229.33.1 Physcomitrella patens e_gw1.229.33.1 I 0.914
estExt_gwp_gw1.C_2460032 Physcomitrella patens estExt_gwp_gw1.C_2460032 I 0.914
SELMODRAFT_165311 Selaginella moellendorffii SELMODRAFT_165311 I 0.901
SELMODRAFT_165556 Selaginella moellendorffii SELMODRAFT_165556 I 0.901
Ciclev10016381m.g Citrus clementina Ciclev10016381m.g N 0.894
orange1.1g026646m.g Citrus sinensis orange1.1g026646m.g N 0.894
AMTR_s00029p00112130 Amborella trichopoda AMTR_s00029p00112130 N 0.890
PRUPE_ppa010730mg Prunus persica PRUPE_ppa010730mg I 0.888
GLYMA06G41620 Glycine max GLYMA06G41620 I 0.885
MTR_2g082640 Medicago truncatula MTR_2g082640 I 0.885
MTR_4g081370 Medicago truncatula MTR_4g081370 I 0.885
POPTR_0001s44230 Populus trichocarpa POPTR_0001s44230 I 0.885
POPTR_0011s13580 Populus trichocarpa POPTR_0011s13580 I 0.885
PRUPE_ppa009077mg Prunus persica PRUPE_ppa009077mg I 0.885
TCM_031118 Theobroma cacao TCM_031118 I 0.885
Ca_06956 Cicer arietinum Ca_06956 I 0.885
Ca_16355 Cicer arietinum Ca_16355 I 0.885
Cla001735 Citrullus lanatus Cla001735 I 0.885
Pm029465 Prunus mume Pm029465 I 0.885
28166.m001054 Ricinus communis 28166.m001054 I 0.885
cassava24574.valid.m1 Manihot esculenta cassava24574.valid.m1 I 0.885
cassava37031.valid.m1 Manihot esculenta cassava37031.valid.m1 I 0.885
cassava37032.valid.m1 Manihot esculenta cassava37032.valid.m1 I 0.885
Cucsa.267130 Cucumis sativus Cucsa.267130 I 0.885
Cucsa.267170 Cucumis sativus Cucsa.267170 I 0.885
Ciclev10009354m.g Citrus clementina Ciclev10009354m.g I 0.885
Eucgr.F03420 Eucalyptus grandis Eucgr.F03420 I 0.885
evm.TU.supercontig_97.78 Carica papaya evm.TU.supercontig_97.78 I 0.885
gene03303-v1.0-hybrid Fragaria vesca gene03303-v1.0-hybrid I 0.885
gene24654-v1.0-hybrid Fragaria vesca gene24654-v1.0-hybrid I 0.885
Lus10011167.g Linum usitatissimum Lus10011167.g I 0.885
Lus10043076.g Linum usitatissimum Lus10043076.g I 0.885
MDP0000264803 Malus domestica MDP0000264803 I 0.885
orange1.1g026599m.g Citrus sinensis orange1.1g026599m.g I 0.885
SapurV1A.0712s0010 Salix purpurea SapurV1A.0712s0010 I 0.885
PK23013.1 Cannabis sativa PK23013.1 I 0.885
AMTR_s00098p00170370 Amborella trichopoda AMTR_s00098p00170370 N 0.879
TCM_030082 Theobroma cacao TCM_030082 I 0.875
GLYMA12G34300 Glycine max GLYMA12G34300 I 0.873
GLYMA13G36260 Glycine max GLYMA13G36260 I 0.873
VIT_12s0059g02650 Vitis vinifera VIT_12s0059g02650 I 0.867
VIT_00s0532g00050 Vitis vinifera VIT_00s0532g00050 N 0.864
PDK_20s1322801g004 Phoenix dactylifera PDK_20s1322801g004 N 0.864
ILR3 Arabidopsis thaliana AT5G54680 D 0.857
Bra002964 Brassica rapa Bra002964 I 0.857
Bra022738 Brassica rapa Bra022738 I 0.857
ILR3 Arabidopsis lyrata fgenesh2_kg.8__1365__AT5G54680.1 I 0.857
Bostr.26833s0797 Boechera stricta Bostr.26833s0797 I 0.857
Cagra.1629s0040 Capsella grandiflora Cagra.1629s0040 I 0.857
Carubv10026758m.g Capsella rubella Carubv10026758m.g I 0.857
Thhalv10014564m.g Eutrema salsugineum Thhalv10014564m.g I 0.857
Aquca_005_00425 Aquilegia coerulea Aquca_005_00425 I 0.855
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I 0.850
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I 0.850
mgf009119m Mimulus guttatus mgf009119m I 0.849
GLYMA15G06803 Glycine max GLYMA15G06803 I 0.847
GLYMA15G06860 Glycine max GLYMA15G06860 I 0.847
GSMUA_Achr8G33180_001 Musa acuminata GSMUA_Achr8G33180_001 I 0.847
Bra029011 Brassica rapa Bra029011 I 0.845