zic6 (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000071496 T091019_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.778 0.837
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.778 0.837
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.778 0.837
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.778 0.837
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.778 0.837
ref-2
M00621_2.00 		Caenorhabditis elegans
CMYRSNGNBH
DVNCNSYRKG		 PBM
Narasimhan et al.(2015)
pTH9089 		0.762 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000096538 C2H2 ZF 262 289
ENSDARP00000096538 C2H2 ZF 295 319
ENSDARP00000096538 C2H2 ZF 325 349
ENSDARP00000096538 C2H2 ZF 355 379

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ref-2 Caenorhabditis elegans WBGene00004335 D 0.762
opa Drosophila melanogaster FBgn0003002 D 0.778
NV11451 Nasonia vitripennis NV11451 I 0.787
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.796
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.790
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.795
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.795
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I 0.795
WBGene00239980 Onchocerca volvulus WBGene00239980 I 0.773
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.775
TC010234 Tribolium castaneum TC010234 I 0.793
SMU15031708 Schmidtea mediterranea SMU15031708 I 0.770
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.797
NEMVEDRAFT_v1g121215 Nematostella vectensis NEMVEDRAFT_v1g121215 I 0.775
KGM_22387 Danaus plexippus KGM_22387 I 0.790
GB54250 Apis mellifera GB54250 I 0.787
GK13239 Drosophila willistoni FBgn0215248 I 0.778
GJ11051 Drosophila virilis FBgn0198317 I 0.778
GD19752 Drosophila simulans FBgn0191241 I 0.778
nLs.2.1.2.g02824 Litomosoides sigmodontis nLs.2.1.2.g02824 I 0.785
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.778
TCLT_0000586501 Thelazia callipaeda TCLT_0000586501 I 0.773
T265_00048 Opisthorchis viverrini T265_00048 I 0.773
SVE_0347600 Strongyloides venezuelensis SVE_0347600 I 0.765
SSTP_0000201100 Strongyloides stercoralis SSTP_0000201100 I 0.768
SPAL_0001746600 Strongyloides papillosus SPAL_0001746600 I 0.765
RSKR_0001155900 Rhabditophanes kr3021 RSKR_0001155900 I 0.765
PTRK_0000799900 Parastrongyloides trichosuri PTRK_0000799900 I 0.768
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.788
GM10780 Drosophila sechellia FBgn0165726 I 0.778
csin109208 Clonorchis sinensis csin109208 I 0.773
BXY_1106000 Bursaphelenchus xylophilus BXY_1106000 I 0.761
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.771
MDOA000052 Musca domestica MDOA000052 I 0.778
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.802
XP_002153782.1 Hydra magnipapillata XP_002153782.1 I 0.775
SNAPOd2T00002718001 Oikopleura dioica SNAPOd2T00002718001 I 0.772
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.773
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.795
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.792
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.780
CRE00505 Caenorhabditis remanei CRE00505 I 0.762
DAPPUDRAFT_290567 Daphnia pulex DAPPUDRAFT_290567 I 0.790
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.795
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.778
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.827
macho1 Ciona intestinalis ENSCING00000007968 I 0.759
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.759
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.795
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.813
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.790
AGAP001291 Anopheles gambiae AGAP001291 I 0.787
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.795
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.815
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.803
GL21621 Drosophila persimilis FBgn0159214 I 0.778
GI10245 Drosophila mojavensis FBgn0133010 I 0.778
GH23039 Drosophila grimshawi FBgn0130496 I 0.778
GG12590 Drosophila erecta FBgn0104878 I 0.778
GF18915 Drosophila ananassae FBgn0095929 I 0.778
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.778
ENSXMAG00000014868 Xiphophorus maculatus ENSXMAG00000014868 I 0.757
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.795
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.802
ENSPSIG00000011885 Pelodiscus sinensis ENSPSIG00000011885 I 0.756
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.795
ENSPFOG00000023954 Poecilia formosa ENSPFOG00000023954 I 0.757
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.795
ENSCSAVG00000002442 Ciona savignyi ENSCSAVG00000002442 N 0.760
ENSCSAVG00000002450 Ciona savignyi ENSCSAVG00000002450 N 0.760
ENSCSAVG00000002454 Ciona savignyi ENSCSAVG00000002454 N 0.760
ENSCSAVG00000002459 Ciona savignyi ENSCSAVG00000002459 N 0.760
ENSCSAVG00000002465 Ciona savignyi ENSCSAVG00000002465 N 0.760
ENSSHAG00000000944 Sarcophilus harrisii ENSSHAG00000000944 N 0.757