PRDM4 (Dasypus novemcinctus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDNOG00000032478 T092272_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.827 1.000
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.827 1.000
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.827 1.000
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDNOP00000028273 C2H2 ZF 587 609
ENSDNOP00000028273 C2H2 ZF 615 637
ENSDNOP00000028273 C2H2 ZF 643 665
ENSDNOP00000028273 C2H2 ZF 671 693
ENSDNOP00000033262 C2H2 ZF 587 609
ENSDNOP00000033262 C2H2 ZF 615 637
ENSDNOP00000033262 C2H2 ZF 643 665
ENSDNOP00000033262 C2H2 ZF 671 693
ENSDNOP00000033262 C2H2 ZF 699 721
ENSDNOP00000033262 C2H2 ZF 727 748

Links

Other C2H2 ZF family TFs
Other Dasypus novemcinctus TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RAP2-11 Arabidopsis thaliana AT5G19790 D
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I
BGIOSGA025360 Oryza indica BGIOSGA025360 I
BGIOSGA037681 Oryza indica BGIOSGA037681 I
Bo2g018360 Brassica oleracea Bo2g018360 I
Bo3g013830 Brassica oleracea Bo3g013830 I
Bo9g152440 Brassica oleracea Bo9g152440 I
Bra002262 Brassica rapa Bra002262 I
Bra006518 Brassica rapa Bra006518 I
Bra020063 Brassica rapa Bra020063 I
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I
F775_02727 Aegilops tauschii F775_02727 I
F775_04303 Aegilops tauschii F775_04303 I
GLYMA13G05690 Glycine max GLYMA13G05690 I
GLYMA16G04410 Glycine max GLYMA16G04410 I
GLYMA18G49761 Glycine max GLYMA18G49761 I
GLYMA19G03120 Glycine max GLYMA19G03120 I
GLYMA19G03165 Glycine max GLYMA19G03165 I
GLYMA19G29000 Glycine max GLYMA19G29000 I
GRMZM2G010100 Zea mays GRMZM2G010100 I
GRMZM2G039112 Zea mays GRMZM2G039112 I
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I
LPERR07G05890 Leersia perrieri LPERR07G05890 I
LPERR12G14340 Leersia perrieri LPERR12G14340 I
MLOC_18783 Hordeum vulgare MLOC_18783 I
MLOC_7255 Hordeum vulgare MLOC_7255 I
MTR_4g082345 Medicago truncatula MTR_4g082345 I
MTR_6g012970 Medicago truncatula MTR_6g012970 I
MTR_6g029180 Medicago truncatula MTR_6g029180 I
MTR_7g011630 Medicago truncatula MTR_7g011630 I
MTR_7g085810 Medicago truncatula MTR_7g085810 I
OB07G15030 Oryza brachyantha OB07G15030 I
OBART07G06690 Oryza barthii OBART07G06690 I
OBART12G17080 Oryza barthii OBART12G17080 I
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I
OLONG_022569 Oryza longistaminata OLONG_022569 I
OMERI09G12500 Oryza meridionalis OMERI09G12500 I
OMERI11G15200 Oryza meridionalis OMERI11G15200 I
ONIVA01G29960 Oryza nivara ONIVA01G29960 I
ONIVA12G15550 Oryza nivara ONIVA12G15550 I
OPUNC07G06390 Oryza punctata OPUNC07G06390 I
OPUNC09G15300 Oryza punctata OPUNC09G15300 I
OPUNC12G15550 Oryza punctata OPUNC12G15550 I
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I
OS07G0204000 Oryza sativa OS07G0204000 I
OS12G0582900 Oryza sativa OS12G0582900 I
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I
Sb01g014810 Sorghum bicolor Sb01g014810 I
Sb02g006023 Sorghum bicolor Sb02g006023 I
Sb08g019530 Sorghum bicolor Sb08g019530 I
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I
Si024417m.g Setaria italica Si024417m.g I
Si033237m.g Setaria italica Si033237m.g I
Si038848m.g Setaria italica Si038848m.g I
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I
TCM_011632 Theobroma cacao TCM_011632 I
TCM_018659 Theobroma cacao TCM_018659 I
TCM_025913 Theobroma cacao TCM_025913 I
TCM_040015 Theobroma cacao TCM_040015 I
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I
RAP2.11 Vitis vinifera VIT_08s0007g07250 I
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I
Ca_08232 Cicer arietinum Ca_08232 I
Ca_10494 Cicer arietinum Ca_10494 I
Ca_25424 Cicer arietinum Ca_25424 I
Cla010474 Citrullus lanatus Cla010474 I
Cla012318 Citrullus lanatus Cla012318 I
Cla021590 Citrullus lanatus Cla021590 I
Pm000004 Prunus mume Pm000004 I
Pm015931 Prunus mume Pm015931 I
Pm025326 Prunus mume Pm025326 I
29635.m000461 Ricinus communis 29635.m000461 I
29813.m001543 Ricinus communis 29813.m001543 I
30084.m000185 Ricinus communis 30084.m000185 I
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I
cassava4189.m1 Manihot esculenta cassava4189.m1 I
cassava4942.m1 Manihot esculenta cassava4942.m1 I
cassava9290.m1 Manihot esculenta cassava9290.m1 I
Cucsa.158080 Cucumis sativus Cucsa.158080 I
Cucsa.258020 Cucumis sativus Cucsa.258020 I
Cucsa.334870 Cucumis sativus Cucsa.334870 I
mgf022665m Mimulus guttatus mgf022665m I
mgf022810m Mimulus guttatus mgf022810m I
mgf023693m Mimulus guttatus mgf023693m I
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I
Carubv10002733m.g Capsella rubella Carubv10002733m.g I
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I
Lus10001298.g Linum usitatissimum Lus10001298.g I
Lus10010652.g Linum usitatissimum Lus10010652.g I
Lus10012703.g Linum usitatissimum Lus10012703.g I
Lus10013614.g Linum usitatissimum Lus10013614.g I
Lus10030430.g Linum usitatissimum Lus10030430.g I
Lus10036793.g Linum usitatissimum Lus10036793.g I
Lus10037137.g Linum usitatissimum Lus10037137.g I
Lus10039171.g Linum usitatissimum Lus10039171.g I
MDP0000128326 Malus domestica MDP0000128326 I
MDP0000177547 Malus domestica MDP0000177547 I
MDP0000276536 Malus domestica MDP0000276536 I
MDP0000525933 Malus domestica MDP0000525933 I
MDP0000551969 Malus domestica MDP0000551969 I
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I
Pavir.J28133 Panicum virgatum Pavir.J28133 I
Pavir.J28151 Panicum virgatum Pavir.J28151 I
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I
PK13330.1 Cannabis sativa PK13330.1 I
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I