CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PRDM1
(
Sorex araneus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSSARG00000004079
T109439_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Prdm1
M08995_2.00
Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A
0.823
0.974
PRDM1
M02874_2.00
Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN
SELEX
Jolma et al.(2013)
PRDM1_1
0.823
0.965
PRDM1
M02731_2.00
Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR
SELEX
Jolma et al.(2010)
PRDM1_dimer
0.823
0.965
PRDM1
M04396_2.00
Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN
SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX
0.823
0.965
PRDM1
M08083_2.00
Homo sapiens
NHACTTTCHY
RDGAAAGTDN
ChIP-seq
Mathelier et al.(2014)
MA0508.2
0.823
0.965
PRDM1
M07845_2.00
Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford
0.823
0.965
PRDM1
M08191_2.00
Homo sapiens
ACTTTCAC
GTGAAAGT
ChIP-seq
Contrino et al.(2012)
Mv110
0.823
0.965
PRDM1
M08192_2.00
Homo sapiens
HRTCACTTT
AAAGTGAYD
ChIP-seq
Contrino et al.(2012)
Mv112
0.823
0.965
PRDM1
M08276_2.00
Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD
ChIP-seq
Schmitges et al.(2016)
O75626.MEME
0.823
0.965
PRDM1
M08854_2.00
Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A
0.823
0.965
PRDM1
M09500_2.00
Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT
Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477
0.823
0.965
PRDM1
M10108_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q4
0.823
0.965
PRDM1
M10109_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01
0.823
0.965
PRDM1
M10110_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6
0.823
0.965
PRDM1
M10111_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM1_03
0.823
0.965
PRDM1
M04397_2.00
Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN
SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX
0.823
0.965
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSARP00000003687
C2H2 ZF
539
561
YECNVCSKTFGQLSNLKVHLRVH
ENSSARP00000003687
C2H2 ZF
567
589
FKCQTCNKGFTQLAHLQKHYLVH
ENSSARP00000003687
C2H2 ZF
595
617
HECQVCHKRFSSTSNLKTHLRLH
ENSSARP00000003687
C2H2 ZF
623
645
YQCKVCPAKFTQFVHLKLHKRLH
ENSSARP00000003687
C2H2 ZF
651
672
HKCVHCHKSYIHLCSLKVHLKG
Links
Other
C2H2 ZF
family TFs
Other
Sorex araneus
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Prdm1
Mus musculus
ENSMUSG00000038151
D
0.823
PRDM1
Homo sapiens
ENSG00000057657
D
0.823
PRDM1
Sus scrofa
ENSSSCG00000004369
I
0.825
PRDM1
Otolemur garnettii
ENSOGAG00000014036
I
0.823
PRDM1
Ochotona princeps
ENSOPRG00000006055
I
0.823
ENSPANG00000016727
Papio anubis
ENSPANG00000016727
I
0.823
ENSPPYG00000016879
Pongo abelii
ENSPPYG00000016879
I
0.823
ENSPSIG00000002661
Pelodiscus sinensis
ENSPSIG00000002661
I
0.825
PRDM1
Pan troglodytes
ENSPTRG00000018457
I
0.823
PRDM1
Pteropus vampyrus
ENSPVAG00000011732
I
0.825
Prdm1
Rattus norvegicus
ENSRNOG00000000323
I
0.823
ENSSHAG00000010080
Sarcophilus harrisii
ENSSHAG00000010080
I
0.816
PRDM1
Ornithorhynchus anatinus
ENSOANG00000004176
I
0.820
ENSSTOG00000016505
Ictidomys tridecemlineatus
ENSSTOG00000016505
I
0.823
PRDM1
Tupaia belangeri
ENSTBEG00000004089
I
0.823
ENSTNIG00000012300
Tetraodon nigroviridis
ENSTNIG00000012300
I
0.768
ENSTSYG00000011666
Tarsius syrichta
ENSTSYG00000011666
I
0.823
PRDM1
Tursiops truncatus
ENSTTRG00000012894
I
0.825
Alligator_sinensis_CCG010485.1
Alligator sinensis
Alligator_sinensis_CCG010485.1
I
0.825
Cmyd_10006231
Chelonia mydas
Cmyd_10006231
I
0.825
ENSP00000358092
Macaca fascicularis
ENSP00000358092
I
0.823
Myotis_brandtii_PRDM1_10034696
Myotis brandtii
Myotis_brandtii_PRDM1_10034696
I
0.825
PRDM1
Gorilla gorilla
ENSGGOG00000001929
I
0.823
ENSAMXG00000004952
Astyanax mexicanus
ENSAMXG00000004952
I
0.787
PRDM1
Canis familiaris
ENSCAFG00000003694
I
0.825
PRDM1
Callithrix jacchus
ENSCJAG00000006332
I
0.823
PRDM1
Cavia porcellus
ENSCPOG00000014064
I
0.815
ENSCSAG00000014744
Chlorocebus sabaeus
ENSCSAG00000014744
I
0.823
PRDM1
Equus caballus
ENSECAG00000009044
I
0.825
PRDM1
Erinaceus europaeus
ENSEEUG00000013222
I
0.827
PRDM1
Echinops telfairi
ENSETEG00000019669
I
0.815
PRDM1
Felis catus
ENSFCAG00000010755
I
0.825
PRDM1
Oryctolagus cuniculus
ENSOCUG00000015495
I
0.815
PRDM1
Loxodonta africana
ENSLAFG00000013436
I
0.823
ENSMEUG00000000043
Macropus eugenii
ENSMEUG00000000043
I
0.816
PRDM1
Microcebus murinus
ENSMICG00000010329
I
0.823
PRDM1
Myotis lucifugus
ENSMLUG00000014085
I
0.825
PRDM1
Macaca mulatta
ENSMMUG00000021401
I
0.823
PRDM1
Monodelphis domestica
ENSMODG00000018029
I
0.808
ENSMPUG00000009522
Mustela putorius furo
ENSMPUG00000009522
I
0.825
ENSNLEG00000013211
Nomascus leucogenys
ENSNLEG00000013211
I
0.823
ENSAMEG00000001482
Ailuropoda melanoleuca
ENSAMEG00000001482
I
0.825