GA10924 (Drosophila pseudoobscura)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0070980 T114642_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.827 1.000
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.827 1.000
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.827 1.000
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.827 1.000
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.827 1.000
ref-2
M00621_2.00 		Caenorhabditis elegans
CMYRSNGNBH
DVNCNSYRKG		 PBM
Narasimhan et al.(2015)
pTH9089 		0.757 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0281511 C2H2 ZF 284 311
FBpp0281511 C2H2 ZF 317 341
FBpp0281511 C2H2 ZF 347 371
FBpp0281511 C2H2 ZF 377 401

Links

Other C2H2 ZF family TFs
Other Drosophila pseudoobscura TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
opa Drosophila melanogaster FBgn0003002 D 0.827
ref-2 Caenorhabditis elegans WBGene00004335 D 0.757
WBGene00239980 Onchocerca volvulus WBGene00239980 I 0.758
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.767
SMU15031708 Schmidtea mediterranea SMU15031708 I 0.772
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.795
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.780
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.771
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.771
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I 0.768
SNAPOd2T00002718001 Oikopleura dioica SNAPOd2T00002718001 I 0.790
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.801
TC010234 Tribolium castaneum TC010234 I 0.812
NV11451 Nasonia vitripennis NV11451 I 0.809
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.766
NEMVEDRAFT_v1g121215 Nematostella vectensis NEMVEDRAFT_v1g121215 I 0.768
KGM_22387 Danaus plexippus KGM_22387 I 0.815
GB54250 Apis mellifera GB54250 I 0.795
XP_002153782.1 Hydra magnipapillata XP_002153782.1 I 0.756
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.770
MDOA000052 Musca domestica MDOA000052 I 0.813
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.762
csin109208 Clonorchis sinensis csin109208 I 0.769
nLs.2.1.2.g02824 Litomosoides sigmodontis nLs.2.1.2.g02824 I 0.758
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.801
PTRK_0000799900 Parastrongyloides trichosuri PTRK_0000799900 I 0.755
RSKR_0001155900 Rhabditophanes kr3021 RSKR_0001155900 I 0.755
SPAL_0001746600 Strongyloides papillosus SPAL_0001746600 I 0.767
SSTP_0000201100 Strongyloides stercoralis SSTP_0000201100 I 0.767
SVE_0347600 Strongyloides venezuelensis SVE_0347600 I 0.767
T265_00048 Opisthorchis viverrini T265_00048 I 0.769
TCLT_0000586501 Thelazia callipaeda TCLT_0000586501 I 0.758
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.804
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.778
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.807
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.766
CRE00505 Caenorhabditis remanei CRE00505 I 0.757
DAPPUDRAFT_290567 Daphnia pulex DAPPUDRAFT_290567 I 0.793
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.768
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.775
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.778
macho1 Ciona intestinalis ENSCING00000007968 I 0.773
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.773
zic6 Danio rerio ENSDARG00000071496 I 0.778
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.771
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.778
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.782
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.771
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.771
AGAP001291 Anopheles gambiae AGAP001291 I 0.812
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.771
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.778
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.771
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.782
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.771
GF18915 Drosophila ananassae FBgn0095929 I 0.827
GG12590 Drosophila erecta FBgn0104878 I 0.827
GH23039 Drosophila grimshawi FBgn0130496 I 0.827
GI10245 Drosophila mojavensis FBgn0133010 I 0.827
GL21621 Drosophila persimilis FBgn0159214 I 0.827
GM10780 Drosophila sechellia FBgn0165726 I 0.827
GD19752 Drosophila simulans FBgn0191241 I 0.827
GJ11051 Drosophila virilis FBgn0198317 I 0.827
GK13239 Drosophila willistoni FBgn0215248 I 0.827