Gorai.005G232300 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.005G232300 T143018_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.913
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.798 0.913
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.848
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.848
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.848
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.696
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G232300.1 C2H2 ZF 106 128
Gorai.005G232300.1 C2H2 ZF 160 182

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZAT10 Arabidopsis thaliana AT1G27730 D 0.796
AZF2 Arabidopsis thaliana AT3G19580 D 0.798
ZAT6 Arabidopsis thaliana AT5G04340 D 0.803
AZF1 Arabidopsis thaliana AT5G67450 D 0.787
AC185108.3_FG011 Zea mays AC185108.3_FG011 I
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.758
Bo1g081350 Brassica oleracea Bo1g081350 I 0.816
Bo1g113530 Brassica oleracea Bo1g113530 I 0.803
Bo2g168030 Brassica oleracea Bo2g168030 I 0.787
Bo3g142840 Brassica oleracea Bo3g142840 I 0.796
Bo5g052290 Brassica oleracea Bo5g052290 I 0.778
Bo5g113850 Brassica oleracea Bo5g113850 I 0.803
Bo7g048650 Brassica oleracea Bo7g048650 I 0.802
Bo7g065200 Brassica oleracea Bo7g065200 I 0.798
Bo9g019120 Brassica oleracea Bo9g019120 I 0.787
Bo9g181170 Brassica oleracea Bo9g181170 I 0.803
Bra009464 Brassica rapa Bra009464 I 0.803
Bra010922 Brassica rapa Bra010922 I 0.796
Bra012914 Brassica rapa Bra012914 I 0.816
Bra022436 Brassica rapa Bra022436 I 0.803
Bra029985 Brassica rapa Bra029985 I 0.816
Bra031834 Brassica rapa Bra031834 I 0.787
Bra032845 Brassica rapa Bra032845 I 0.778
Bra033666 Brassica rapa Bra033666 I 0.798
Bra037845 Brassica rapa Bra037845 I 0.787
Bra038219 Brassica rapa Bra038219 I 0.803
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.758
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.796
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.803
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.803
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.803
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.774
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.803
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.803
GRMZM2G338056 Zea mays GRMZM2G338056 I
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.758
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.763
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.764
MLOC_70662 Hordeum vulgare MLOC_70662 I
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.802
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.803
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.803
OB03G31780 Oryza brachyantha OB03G31780 I 0.758
OB03G42170 Oryza brachyantha OB03G42170 I 0.784
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.758
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.758
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.768
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.758
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.758
OS03G0437200 Oryza sativa OS03G0437200 I 0.758
OS12G0583700 Oryza sativa OS12G0583700 I 0.768
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.802
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.798
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.803
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.803
Sb02g038070 Sorghum bicolor Sb02g038070 I
Sb05g027450 Sorghum bicolor Sb05g027450 I
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.803
Si032711m.g Setaria italica Si032711m.g I
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.764
TCM_000780 Theobroma cacao TCM_000780 I 0.796
TCM_007214 Theobroma cacao TCM_007214 I 0.803
TCM_034720 Theobroma cacao TCM_034720 I 0.803
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.773
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.797
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.802
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.803
Ca_01586 Cicer arietinum Ca_01586 I 0.803
Ca_05641 Cicer arietinum Ca_05641 I 0.774
Ca_18364 Cicer arietinum Ca_18364 I 0.803
Pm005390 Prunus mume Pm005390 I 0.803
Pm021284 Prunus mume Pm021284 I 0.803
30170.m013751 Ricinus communis 30170.m013751 I 0.796
30174.m008818 Ricinus communis 30174.m008818 I
cassava14164.m1 Manihot esculenta cassava14164.m1 I
cassava19892.m1 Manihot esculenta cassava19892.m1 I
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.803
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.803
mgf017082m Mimulus guttatus mgf017082m I
mgf021094m Mimulus guttatus mgf021094m I
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.802
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.803
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.803
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.803
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.803
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.798
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.798
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.803
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.803
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.803
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.774
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.803
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.779
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.787
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.803
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.803
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.803
MDP0000198015 Malus domestica MDP0000198015 I 0.803
MDP0000319225 Malus domestica MDP0000319225 I 0.803
MDP0000573176 Malus domestica MDP0000573176 I 0.803
MDP0000762756 Malus domestica MDP0000762756 I 0.803
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.803
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.803
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I
Pavir.J15191 Panicum virgatum Pavir.J15191 I
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.798
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.798
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.803
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.816
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.803
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.803
PK10188.1 Cannabis sativa PK10188.1 I 0.803
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.803
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.803
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.803
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.803
BGIOSGA010469 Oryza indica BGIOSGA010469 N
BGIOSGA010470 Oryza indica BGIOSGA010470 N
BGIOSGA026045 Oryza indica BGIOSGA026045 N
BRADI2G49250 Brachypodium distachyon BRADI2G49250 N
F775_12743 Aegilops tauschii F775_12743 N
GRMZM5G883760 Zea mays GRMZM5G883760 N
LPERR03G19190 Leersia perrieri LPERR03G19190 N
LPERR07G17860 Leersia perrieri LPERR07G17860 N
OB03G31790 Oryza brachyantha OB03G31790 N
OBART03G22560 Oryza barthii OBART03G22560 N
OGLUM03G23340 Oryza glumaepatula OGLUM03G23340 N
ONIVA07G18980 Oryza nivara ONIVA07G18980 N
OPUNC03G21190 Oryza punctata OPUNC03G21190 N
ORGLA03G0210200 Oryza glaberrima ORGLA03G0210200 N
ORUFI03G23230 Oryza rufipogon ORUFI03G23230 N
ORUFI07G21440 Oryza rufipogon ORUFI07G21440 N
OS03G0437100 Oryza sativa OS03G0437100 N
OS07G0588600 Oryza sativa OS07G0588600 N
OS11G0340477 Oryza sativa OS11G0340477 N
Sb01g031920 Sorghum bicolor Sb01g031920 N
Si037343m.g Setaria italica Si037343m.g N
Si037516m.g Setaria italica Si037516m.g N
Traes_2BS_494F02775 Triticum aestivum Traes_2BS_494F02775 N
Traes_2DS_11ADF414D Triticum aestivum Traes_2DS_11ADF414D N