Pavir.J33608 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J33608 T143430_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J33608.1.p C2H2 ZF 80 102
Pavir.J33608.1.p C2H2 ZF 128 150

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava23439.valid.m1 Manihot esculenta cassava23439.valid.m1 I
POPTR_0005s10610 Populus trichocarpa POPTR_0005s10610 I
Gorai.002G001900 Gossypium raimondii Gorai.002G001900 N
Cucsa.119310 Cucumis sativus Cucsa.119310 N
mgf013168m Mimulus guttatus mgf013168m N
Aquca_015_00469 Aquilegia coerulea Aquca_015_00469 N
Bostr.18351s0165 Boechera stricta Bostr.18351s0165 N
Cagra.0805s0005 Capsella grandiflora Cagra.0805s0005 N
Carubv10014350m.g Capsella rubella Carubv10014350m.g N
Ciclev10029007m.g Citrus clementina Ciclev10029007m.g N
Eucgr.I01494 Eucalyptus grandis Eucgr.I01494 N
evm.TU.supercontig_320.2 Carica papaya evm.TU.supercontig_320.2 N
gene17203-v1.0-hybrid Fragaria vesca gene17203-v1.0-hybrid N
Thhalv10022800m.g Eutrema salsugineum Thhalv10022800m.g N
Gorai.003G003900 Gossypium raimondii Gorai.003G003900 N
Gorai.005G257800 Gossypium raimondii Gorai.005G257800 N
Gorai.008G038800 Gossypium raimondii Gorai.008G038800 N
MDP0000480581 Malus domestica MDP0000480581 N
MDP0000868556 Malus domestica MDP0000868556 N
orange1.1g023427m.g Citrus sinensis orange1.1g023427m.g N
SapurV1A.0080s0480 Salix purpurea SapurV1A.0080s0480 N
SapurV1A.0218s0020 Salix purpurea SapurV1A.0218s0020 N
anac036 Arabidopsis thaliana AT2G17040 N
POPTR_0009s14370 Populus trichocarpa POPTR_0009s14370 N
Bo3g092020 Brassica oleracea Bo3g092020 N
Bo7g015050 Brassica oleracea Bo7g015050 N
Bra002018 Brassica rapa Bra002018 N
Bra013034 Brassica rapa Bra013034 N
anac036 Arabidopsis lyrata fgenesh2_kg.3__3291__AT2G17040.1 N
GLYMA11G10230 Glycine max GLYMA11G10230 N
GLYMA12G02540 Glycine max GLYMA12G02540 N
MTR_4g075980 Medicago truncatula MTR_4g075980 N
POPTR_0004s18860 Populus trichocarpa POPTR_0004s18860 N
cassava30341.valid.m1 Manihot esculenta cassava30341.valid.m1 N
PRUPE_ppa009455mg Prunus persica PRUPE_ppa009455mg N
TCM_006499 Theobroma cacao TCM_006499 N
VIT_04s0008g00150 Vitis vinifera VIT_04s0008g00150 N
Ca_11128 Cicer arietinum Ca_11128 N
Cla007018 Citrullus lanatus Cla007018 N
Pm020961 Prunus mume Pm020961 N
29797.m000353 Ricinus communis 29797.m000353 N
29830.m001415 Ricinus communis 29830.m001415 N
cassava13355.valid.m1 Manihot esculenta cassava13355.valid.m1 N