cassava38260.valid.m1 (Manihot esculenta)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02045 (CBFB_NFYA) IPR001289 cassava38260.valid.m1 T160575_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFYA
M08104_2.00 		Homo sapiens
NSTGATTGGYB
VRCCAATCASN		 ChIP-seq
Mathelier et al.(2014)
MA0060.3 		0.714 0.714
NFYA
M09018_2.00 		Homo sapiens
YKBYSATTGGYYRV
BYRRCCAATSRVMR		 Misc
Kulakovskiy et al.(2013)
NFYA_HUMAN.H11MO.0.A 		0.714 0.714
Nfya
M09019_2.00 		Mus musculus
YKBYSATTGGYYRV
BYRRCCAATSRVMR		 Misc
Kulakovskiy et al.(2013)
NFYA_MOUSE.H11MO.0.A 		0.714 0.714
NFYA
M10403_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFYA_02 		0.714 0.714
NFYA
M10404_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFYA_Q5 		0.714 0.714
NFYA
M10405_2.00 		Homo sapiens
NYTGATTGGYTAVH
DBTARCCAATCARN		 Transfac
Matys et al.(2006)
V$NFY_C 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava38260.valid.m1 CBF/NF-Y 99 154

Links

Other CBF/NF-Y family TFs
Other Manihot esculenta TFs

642 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GT-1 Arabidopsis lyrata scaffold_101505.1 D
MTR_3g085960 Medicago truncatula MTR_3g085960 D
MDP0000164819 Malus domestica MDP0000164819 D
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D
OS04G0486400 Oryza sativa OS04G0486400 D
GLYMA11G37390 Glycine max GLYMA11G37390 D
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D
29929.m004704 Ricinus communis 29929.m004704 D
PK20543.1 Cannabis sativa PK20543.1 D
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D
GT-4 Arabidopsis thaliana AT3G25990 D
GT-1 Arabidopsis thaliana AT1G13450 D
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I
Carubv10017413m.g Capsella rubella Carubv10017413m.g I
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I
Carubv10009313m.g Capsella rubella Carubv10009313m.g I
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I
Lus10015824.g Linum usitatissimum Lus10015824.g I
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I
Pm016214 Prunus mume Pm016214 I
Lus10036978.g Linum usitatissimum Lus10036978.g I
MDP0000275412 Malus domestica MDP0000275412 I
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I
Bo2g138840 Brassica oleracea Bo2g138840 I
Bo5g017510 Brassica oleracea Bo5g017510 I
Bo8g107400 Brassica oleracea Bo8g107400 I
Bra019721 Brassica rapa Bra019721 I
Bra036354 Brassica rapa Bra036354 I
GLYMA18G01360 Glycine max GLYMA18G01360 I
GRMZM2G047370 Zea mays GRMZM2G047370 I
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I
MLOC_64014 Hordeum vulgare MLOC_64014 I
OB04G23970 Oryza brachyantha OB04G23970 I
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I
mgf016368m Mimulus guttatus mgf016368m I
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I
Si010147m.g Setaria italica Si010147m.g I
Si036121m.g Setaria italica Si036121m.g I
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I
TCM_010751 Theobroma cacao TCM_010751 I
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I
Ca_11315 Cicer arietinum Ca_11315 I
Cla023054 Citrullus lanatus Cla023054 I
Pm006885 Prunus mume Pm006885 I
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I
Cucsa.394820 Cucumis sativus Cucsa.394820 I