Bo4g145670 (Brassica oleracea)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 Bo4g145670 T164292_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CSP4
M01902_2.00 		Arabidopsis thaliana
AAWAAAAM
KTTTTWTT		 PBM
Weirauch et al.(2014)
pTH7494 		0.864 0.864
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g145670.1 CSD 57 123

Links

Other CSD family TFs
Other Brassica oleracea TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CSP4 Arabidopsis thaliana AT2G21060 D 0.864
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.848
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.712
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.712
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.864
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.848
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.742
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.727
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.742
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.864
Bra031159 Brassica rapa Bra031159 I 0.894
Bra030325 Brassica rapa Bra030325 I 0.970
Bo8g102040 Brassica oleracea Bo8g102040 I 0.894
Bo7g049880 Brassica oleracea Bo7g049880 I 0.818
Bo3g141510 Brassica oleracea Bo3g141510 I 0.833
Bo2g119240 Brassica oleracea Bo2g119240 I 0.796
CSP2 Arabidopsis thaliana AT4G38680 I 0.864
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.712
MDP0000202739 Malus domestica MDP0000202739 N 0.712
MDP0000155077 Malus domestica MDP0000155077 N 0.712
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.712
Lus10025058.g Linum usitatissimum Lus10025058.g N 0.712
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.712
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.727
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.727
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.742
Ca_11038 Cicer arietinum Ca_11038 N 0.712
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.712