Bostr.25542s0051 (Boechera stricta)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Bostr.25542s0051 T165424_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CSP4
M01902_2.00 		Arabidopsis thaliana
AAWAAAAM
KTTTTWTT		 PBM
Weirauch et al.(2014)
pTH7494 		0.894 0.894
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.25542s0051.1.p CSD 11 77

Links

Other CSD family TFs
Other Boechera stricta TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CSP4 Arabidopsis thaliana AT2G21060 D 0.894
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.758
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.712
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.742
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.742
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.939
mgf015980m Mimulus guttatus mgf015980m I 0.727
Pm020837 Prunus mume Pm020837 I 0.712
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.742
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.955
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.758
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.909
Bra031159 Brassica rapa Bra031159 I 0.848
Bra030325 Brassica rapa Bra030325 I 0.879
Bo8g102040 Brassica oleracea Bo8g102040 I 0.848
Bo7g049880 Brassica oleracea Bo7g049880 I 0.758
Bo4g145670 Brassica oleracea Bo4g145670 I 0.848
Bo3g141510 Brassica oleracea Bo3g141510 I 0.864
Bo2g119240 Brassica oleracea Bo2g119240 I 0.714
CSP2 Arabidopsis thaliana AT4G38680 I 0.955
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.712
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.727
mgf001526m Mimulus guttatus mgf001526m N 0.727
mgf014458m Mimulus guttatus mgf014458m N 0.727
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.707
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.712