Gfo_R010339 (Geospiza fortis)
CSL

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF09271 (LAG1-DNAbind) IPR015351 Gfo_R010339 T166305_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBPJ
M00735_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig2 		0.992 0.992
RBPJ
M00736_2.00 		Homo sapiens
NNNYTCHCAN
NTGDGARNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig4 		0.992 0.992
RBPJ
M00737_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL-NOTCH1 		0.992 0.992
RBPJ
M00738_2.00 		Homo sapiens
NBTCHCAN
NTGDGAVN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His_MAML1 		0.992 0.992
RBPJ
M00739_2.00 		Homo sapiens
NNBTCHCAN
NTGDGAVNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His 		0.992 0.992
RBPJ
M00740_2.00 		Homo sapiens
NNNYTCYCAN
NTGRGARNNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_Fig2 		0.992 0.992
RBPJ
M00741_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig2 		0.992 0.992
RBPJ
M00742_2.00 		Homo sapiens
NDYTCHCAB
VTGDGARHN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig5 		0.992 0.992
RBPJ
M08105_2.00 		Homo sapiens
NNTTCCCABN
NVTGGGAANN		 ChIP-seq
Mathelier et al.(2014)
MA1116.1 		0.992 0.992
RBPJ
M09020_2.00 		Homo sapiens
BTTCCCASVVN
NBBSTGGGAAV		 Misc
Kulakovskiy et al.(2013)
SUH_HUMAN.H11MO.0.A 		0.992 0.992
Rbpj
M09021_2.00 		Mus musculus
NBTTCCCASVV
BBSTGGGAAVN		 Misc
Kulakovskiy et al.(2013)
SUH_MOUSE.H11MO.0.A 		0.992 0.992
RBPJ
M10413_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_01 		0.992 0.992
RBPJ
M10414_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_Q4 		0.992 0.992
Su(H)
M10415_2.00 		Drosophila melanogaster
VGKTTCYCACRVY
RBYGTGRGAAMCB		 Transfac
Matys et al.(2006)
I$SUH_01 		0.794 0.794
Su(H)
M08455_2.00 		Drosophila melanogaster
HBHNVGKTTCYCACRV
BYGTGRGAAMCBNDVD		 COMPILED
Mathelier et al.(2014)
MA0085.1 		0.794 0.794
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R010339 CSL 16 146

Links

Other CSL family TFs
Other Geospiza fortis TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RBPJ Homo sapiens ENSG00000168214 D 1.000
Rbpj Mus musculus ENSMUSG00000039191 D 0.992
Su(H) Drosophila melanogaster FBgn0004837 D 0.794
CpipJ_CPIJ004183 Culex pipiens CpipJ_CPIJ004183 I 0.740
AAEL006419 Aedes aegypti AAEL006419 I 0.771
ACEP17167 Atta cephalotes ACEP17167 I 0.786
ACYPI001225 Acyrthosiphon pisum ACYPI001225 I 0.710
ACYPI009607 Acyrthosiphon pisum ACYPI009607 I 0.710
ADAC001896 Anopheles darlingi ADAC001896 I 0.708
AGAP008935 Anopheles gambiae AGAP008935 I 0.763
BGIBMGA003113 Bombyx mori BGIBMGA003113 I 0.794
CapteG179039 Capitella teleta CapteG179039 I 0.809
CGI_10018383 Crassostrea gigas CGI_10018383 I 0.840
CPIJ004183 Culex quinquefasciatus CPIJ004183 I 0.740
DAPPUDRAFT_98470 Daphnia pulex DAPPUDRAFT_98470 I 0.779
RBPJ Anolis carolinensis ENSACAG00000014578 I 0.992
ENSAMEG00000018082 Ailuropoda melanoleuca ENSAMEG00000018082 I 0.992
ENSAMXG00000010835 Astyanax mexicanus ENSAMXG00000010835 I 0.947
ENSAMXG00000011180 Astyanax mexicanus ENSAMXG00000011180 I 0.908
ENSAPLG00000007512 Anas platyrhynchos ENSAPLG00000007512 I 1.000
RBPJ Bos taurus ENSBTAG00000003602 I 0.992
RBPJ Canis familiaris ENSCAFG00000016387 I 0.992
RBPJ Choloepus hoffmanni ENSCHOG00000001582 I 0.992
RBPJ Callithrix jacchus ENSCJAG00000021033 I 0.992
RBPJ Cavia porcellus ENSCPOG00000007041 I 0.929
ENSCSAVG00000010744 Ciona savignyi ENSCSAVG00000010744 I 0.702
rbpja Danio rerio ENSDARG00000003398 I 0.924
rbpjb Danio rerio ENSDARG00000052091 I 0.962
RBPJ Dasypus novemcinctus ENSDNOG00000035383 I 0.992
Rbpj Dipodomys ordii ENSDORG00000006352 I 0.992
RBPJ Equus caballus ENSECAG00000019257 I 0.992
RBPJ Erinaceus europaeus ENSEEUG00000009686 I 0.992
ENSFALG00000009154 Ficedula albicollis ENSFALG00000009154 I 1.000
RBPJ Felis catus ENSFCAG00000030363 I 0.946
rbpja Gasterosteus aculeatus ENSGACG00000015888 I 0.885
RBPJ Gallus gallus ENSGALG00000014365 I 1.000
RBPJ Gorilla gorilla ENSGGOG00000004582 I 0.992
ENSGMOG00000004951 Gadus morhua ENSGMOG00000004951 I 0.901
ENSGMOG00000006156 Gadus morhua ENSGMOG00000006156 I 0.944
ENSLACG00000007296 Latimeria chalumnae ENSLACG00000007296 I 0.992
RBPJ Loxodonta africana ENSLAFG00000000410 I 0.992
ENSLOCG00000009731 Lepisosteus oculatus ENSLOCG00000009731 I 0.992
RBPJ Meleagris gallopavo ENSMGAG00000012418 I 0.969
RBPJ Myotis lucifugus ENSMLUG00000017187 I 0.992
RBPJ Macaca mulatta ENSMMUG00000015828 I 0.992
RBPJ Monodelphis domestica ENSMODG00000000129 I 0.985
ENSMPUG00000016715 Mustela putorius furo ENSMPUG00000016715 I 0.992
ENSNLEG00000016895 Nomascus leucogenys ENSNLEG00000016895 I 0.992
RBPJ Ornithorhynchus anatinus ENSOANG00000006699 I 0.992
ENSOARG00000008166 Ovis aries ENSOARG00000008166 I 0.992
RBPJ Oryctolagus cuniculus ENSOCUG00000013449 I 0.992
RBPJ Otolemur garnettii ENSOGAG00000007913 I 0.992
ENSONIG00000008873 Oreochromis niloticus ENSONIG00000008873 I 0.878
ENSONIG00000009281 Oreochromis niloticus ENSONIG00000009281 I 0.962
rbpja Oryzias latipes ENSORLG00000004882 I 0.845
ENSORLG00000006995 Oryzias latipes ENSORLG00000006995 I 0.809
ENSPANG00000021176 Papio anubis ENSPANG00000021176 I 0.992
ENSPFOG00000012004 Poecilia formosa ENSPFOG00000012004 I 0.969
ENSPFOG00000016494 Poecilia formosa ENSPFOG00000016494 I 0.786
ENSPPYG00000014652 Pongo abelii ENSPPYG00000014652 I 0.992
ENSPPYG00000019874 Pongo abelii ENSPPYG00000019874 I 0.817
ENSPSIG00000016822 Pelodiscus sinensis ENSPSIG00000016822 I 0.992
RBPJ Pan troglodytes ENSPTRG00000015968 I 0.992
RBPJ Pteropus vampyrus ENSPVAG00000014199 I 0.992
Rbpj Rattus norvegicus ENSRNOG00000007797 I 0.916
Rbpj Rattus norvegicus ENSRNOG00000046327 I 0.992
RBPJ Sorex araneus ENSSARG00000001169 I 0.992
ENSSHAG00000003329 Sarcophilus harrisii ENSSHAG00000003329 I 0.985
RBPJ Sus scrofa ENSSSCG00000022155 I 0.992
ENSSTOG00000004547 Ictidomys tridecemlineatus ENSSTOG00000004547 I 0.992
RBPJ Tupaia belangeri ENSTBEG00000002676 I 0.992
RBPJ Taeniopygia guttata ENSTGUG00000009245 I 1.000
RBPJ Tetraodon nigroviridis ENSTNIG00000012994 I 0.969
RBPJ Takifugu rubripes ENSTRUG00000014798 I 0.977
ENSTSYG00000001894 Tarsius syrichta ENSTSYG00000001894 I 0.992
RBPJ Tursiops truncatus ENSTTRG00000009022 I 0.992
ENSXMAG00000009877 Xiphophorus maculatus ENSXMAG00000009877 I 0.969
ENSXMAG00000012207 Xiphophorus maculatus ENSXMAG00000012207 I 0.802
Su(H) Drosophila simulans FBgn0027417 I 0.794
GF14905 Drosophila ananassae FBgn0091930 I 0.794
GG25142 Drosophila erecta FBgn0117267 I 0.794
GH10915 Drosophila grimshawi FBgn0118396 I 0.794
GI13259 Drosophila mojavensis FBgn0136016 I 0.786
GL26026 Drosophila persimilis FBgn0163608 I 0.794
GM15894 Drosophila sechellia FBgn0170810 I 0.794
GJ11880 Drosophila virilis FBgn0199134 I 0.794
GE20814 Drosophila yakuba FBgn0238107 I 0.794
GA25242 Drosophila pseudoobscura FBgn0246623 I 0.794
GA25243 Drosophila pseudoobscura FBgn0246624 I 0.794
GB45655 Apis mellifera GB45655 I 0.786
HMEL017244 Heliconius melpomene HMEL017244 I 0.802
ISCW010197 Ixodes scapularis ISCW010197 I 0.786
KGM_08407 Danaus plexippus KGM_08407 I 0.802
L798_15068 Zootermopsis nevadensis L798_15068 I 0.802
LotgiG159505 Lottia gigantea LotgiG159505 I 0.802
MESCA005881 Megaselia scalaris MESCA005881 I 0.758
NV17858 Nasonia vitripennis NV17858 I 0.802
NV17967 Nasonia vitripennis NV17967 I 0.748
PHUM462870 Pediculus humanus PHUM462870 I 0.771
SINV15808 Solenopsis invicta SINV15808 I 0.786
SMAR001432 Strigamia maritima SMAR001432 I 0.824
TC014468 Tribolium castaneum TC014468 I 0.794
tetur04g02700 Tetranychus urticae tetur04g02700 I 0.791
tetur04g02730 Tetranychus urticae tetur04g02730 I 0.791
tetur11g00180 Tetranychus urticae tetur11g00180 I 0.763
YQE_03219 Dendroctonus ponderosae YQE_03219 I 0.792
Aan_R011115 Calypte anna Aan_R011115 I 1.000
Afo_R009248 Aptenodytes forsteri Afo_R009248 I 1.000
Alligator_sinensis_CCG006987.1 Alligator sinensis Alligator_sinensis_CCG006987.1 I 0.992
Brh_R001357 Buceros rhinoceros Brh_R001357 I 1.000
Cflo_01916--XP_397309.1_APIME Camponotus floridanus Cflo_01916--XP_397309.1_APIME I 0.786
Cmyd_10010997 Chelonia mydas Cmyd_10010997 I 0.992
ENSBTAP00000004696-D1 Bos grunniens ENSBTAP00000004696-D1 I 0.992
ENSP00000354528 Macaca fascicularis ENSP00000354528 I 0.992
Hsal_09918--XP_397309.1_APIME Harpegnathos saltator Hsal_09918--XP_397309.1_APIME I 0.794
Myotis_brandtii_RBPJ_10027377 Myotis brandtii Myotis_brandtii_RBPJ_10027377 I 0.992
Ogr02745 Ophisaurus gracilis Ogr02745 I 0.983
Pvit_10584 Pogona vitticeps Pvit_10584 I 0.992
Tal_R001466 Tyto alba Tal_R001466 I 1.000
fgenesh2_pg.scaffold_60000013 Branchiostoma floridae fgenesh2_pg.scaffold_60000013 I 0.847
fgenesh2_pg.scaffold_82000019 Branchiostoma floridae fgenesh2_pg.scaffold_82000019 I 0.855
Ocbimv22031643m.g Octopus bimaculoides Ocbimv22031643m.g I 0.863
Sakowv30027441m.g Saccoglossus kowalevskii Sakowv30027441m.g I 0.847
AAB05479 Xenopus laevis AAB05479 I 0.985
CLEC005205 Cimex lectularius CLEC005205 I 0.771
HHAL001644-PA Halyomorpha halys HHAL001644-PA I 0.771
LCUP003485 Lucilia cuprina LCUP003485 I 0.786
LDEC018359 Leptinotarsa decemlineata LDEC018359 I 0.794
rbpj Xenopus tropicalis XB-GENE-490756 I 0.992
rbpj.S Xenopus laevis XB-GENE-865998 I 0.985
AALB007981 Anopheles albimanus AALB007981 I 0.763
AARA009493 Anopheles arabiensis AARA009493 I 0.725
AATE009298 Anopheles atroparvus AATE009298 I 0.756
ACOM040639 Anopheles coluzzii ACOM040639 I 0.763
ACUA014515 Anopheles culicifacies ACUA014515 I 0.763
ADIR011431 Anopheles dirus ADIR011431 I 0.763
AEPI005106 Anopheles epiroticus AEPI005106 I 0.725
AFAF012186 Anopheles farauti AFAF012186 I 0.763
AFUN007280 Anopheles funestus AFUN007280 I 0.763
AMAM009373 Anopheles maculatus AMAM009373 I 0.718
AMEC017285 Anopheles melas AMEC017285 I 0.725
AMEM004324 Anopheles merus AMEM004324 I 0.763
AMIN005880 Anopheles minimus AMIN005880 I 0.763
AQUA011533 Anopheles quadriannulatus AQUA011533 I 0.766
ASIS021327 Anopheles sinensis ASIS021327 I 0.752
ASTEI01929 Anopheles stephensi ASTEI01929 I 0.756
LLOJ000759 Lutzomyia longipalpis LLOJ000759 I 0.718
MDOA002342 Musca domestica MDOA002342 I 0.786
BTMF_0000429201 Brugia timori BTMF_0000429201 I 0.762
D915_08968 Fasciola hepatica D915_08968 I 0.712
GPLIN_001569000 Globodera pallida GPLIN_001569000 I 0.765
NEMVEDRAFT_v1g206550 Nematostella vectensis NEMVEDRAFT_v1g206550 N 0.702