OBART12G18630 (Oryza barthii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OBART12G18630 T221379_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.861 0.929
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.861 0.929
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART12G18630.1 Homeodomain 28 87

Links

Other Homeodomain family TFs
Other Oryza barthii TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb05g027785 Sorghum bicolor Sb05g027785 N 0.000
Pavir.J39141 Panicum virgatum Pavir.J39141 N 0.000
Pavir.J31658 Panicum virgatum Pavir.J31658 N 0.000
Pavir.Hb00044 Panicum virgatum Pavir.Hb00044 N 0.000
Pavir.Ha00317 Panicum virgatum Pavir.Ha00317 N 0.000
TRIUR3_21533 Triticum urartu TRIUR3_21533 N 0.000
Traes_5AL_1A7387EDC Triticum aestivum Traes_5AL_1A7387EDC N 0.000
Traes_4DS_C7C37A73D Triticum aestivum Traes_4DS_C7C37A73D N 0.000
Traes_4DS_A5CD70F30 Triticum aestivum Traes_4DS_A5CD70F30 N 0.000
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N 0.000
Traes_4BS_344A932261 Triticum aestivum Traes_4BS_344A932261 N 0.000
Traes_4BS_2EA81743E1 Triticum aestivum Traes_4BS_2EA81743E1 N 0.000
Traes_4AL_E769BB5A6 Triticum aestivum Traes_4AL_E769BB5A6 N 0.000
Traes_4AL_B2CACD56E Triticum aestivum Traes_4AL_B2CACD56E N 0.000
Traes_4AL_977AF4963 Triticum aestivum Traes_4AL_977AF4963 N 0.000
Si026116m.g Setaria italica Si026116m.g N 0.000
BGIOSGA035743 Oryza indica BGIOSGA035743 N 0.000
OS11G0705900 Oryza sativa OS11G0705900 N 0.000
ORUFI11G25560 Oryza rufipogon ORUFI11G25560 N 0.000
ORGLA11G0190400 Oryza glaberrima ORGLA11G0190400 N 0.000
ONIVA11G23200 Oryza nivara ONIVA11G23200 N 0.000
OGLUM11G22840 Oryza glumaepatula OGLUM11G22840 N 0.000
OBART11G23680 Oryza barthii OBART11G23680 N 0.000
OB11G28100 Oryza brachyantha OB11G28100 N 0.000
MLOC_7746 Hordeum vulgare MLOC_7746 N 0.000
MLOC_5548 Hordeum vulgare MLOC_5548 N 0.000
LPERR11G20420 Leersia perrieri LPERR11G20420 N 0.000
GRMZM2G073823 Zea mays GRMZM2G073823 N 0.000
F775_08285 Aegilops tauschii F775_08285 N 0.000
F775_08284 Aegilops tauschii F775_08284 N 0.000
BRADI4G09190 Brachypodium distachyon BRADI4G09190 N 0.000