cassava24281.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava24281.valid.m1 T227076_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.929
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.929
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.929
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.861 0.946
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.861 0.946
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava24281.valid.m1 Homeodomain 32 91

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK18401.1 Cannabis sativa PK18401.1 D
29711.m000322 Ricinus communis 29711.m000322 I
Pm026758 Prunus mume Pm026758 I
29830.m001386 Ricinus communis 29830.m001386 I
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I
Cucsa.043580 Cucumis sativus Cucsa.043580 I
Cucsa.169240 Cucumis sativus Cucsa.169240 I
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I
mgf017107m Mimulus guttatus mgf017107m I
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I
Lus10028456.g Linum usitatissimum Lus10028456.g I
Lus10041908.g Linum usitatissimum Lus10041908.g I
MDP0000275844 Malus domestica MDP0000275844 I
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I
BGIOSGA008112 Oryza indica BGIOSGA008112 I
GLYMA08G15740 Glycine max GLYMA08G15740 I
GLYMA12G02740 Glycine max GLYMA12G02740 I
GLYMA15G29630 Glycine max GLYMA15G29630 I
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I
MTR_4g075480 Medicago truncatula MTR_4g075480 I
OPUNC02G13570 Oryza punctata OPUNC02G13570 I
OS02G0433600 Oryza sativa OS02G0433600 I
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I
TCM_000204 Theobroma cacao TCM_000204 I
TCM_006692 Theobroma cacao TCM_006692 I
bHLH121 Vitis vinifera VIT_03s0038g01790 I
bHLH11 Vitis vinifera VIT_04s0023g03430 I
Cla014511 Citrullus lanatus Cla014511 I
Pm021043 Prunus mume Pm021043 I