Bostr.3288s0193 (Boechera stricta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Bostr.3288s0193 T228147_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.778 0.653
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.634 0.551
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.610 0.408
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.610 0.408
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.610 0.408
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.610 0.408
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.601 0.429
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.601 0.408
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.600 0.388
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.3288s0193.1.p Homeodomain 354 405

Links

Other Homeodomain family TFs
Other Boechera stricta TFs

1212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_26601 Ancylostoma caninum ANCCAN_26601 I 0.000
HPLM_0001265501 Haemonchus placei HPLM_0001265501 I 0.000
nAv.1.0.1.g08977 Acanthocheilonema viteae nAv.1.0.1.g08977 I 0.000
WBGene00249134 Onchocerca volvulus WBGene00249134 I 0.000
SINV25324 Solenopsis invicta SINV25324 I 0.000
nDi.2.2.2.g10428 Dirofilaria immitis nDi.2.2.2.g10428 I 0.000
NECAME_04088 Necator americanus NECAME_04088 I 0.000
MESCA000156 Megaselia scalaris MESCA000156 I 0.000
Gfo_R008628 Geospiza fortis Gfo_R008628 I 0.000
HPBE_0000494401 Heligmosomoides bakeri HPBE_0000494401 I 0.000
OESDEN_04475 Oesophagostomum dentatum OESDEN_04475 I 0.000
NKX6-1 Sus scrofa ENSSSCG00000009232 I 0.000
ENSSHAG00000002937 Sarcophilus harrisii ENSSHAG00000002937 I 0.000
ENSPFOG00000002761 Poecilia formosa ENSPFOG00000002761 I 0.000
ACUA001481 Anopheles culicifacies ACUA001481 I 0.000
ENSOANG00000006212 Ornithorhynchus anatinus ENSOANG00000006212 I 0.000
ENSMICG00000006922 Microcebus murinus ENSMICG00000006922 I 0.000
ENSMEUG00000009353 Macropus eugenii ENSMEUG00000009353 I 0.000
ENSECAG00000018325 Equus caballus ENSECAG00000018325 I 0.000
NKX6-1 Choloepus hoffmanni ENSCHOG00000005454 I 0.000
ENSAPLG00000005538 Anas platyrhynchos ENSAPLG00000005538 I 0.000
HCOI01570100 Haemonchus contortus HCOI01570100 I 0.000
Hba_19656 Heterorhabditis bacteriophora Hba_19656 I 0.000
SCUD_0002260901 Schistosoma curassoni SCUD_0002260901 I 0.000
SMTD_0002181901 Schistosoma mattheei SMTD_0002181901 I 0.000
Sjc_0024500 Schistosoma japonicum Sjc_0024500 I 0.000
D917_08408 Trichinella nativa D917_08408 N 0.000
D917_05078 Trichinella nativa D917_05078 N 0.000
AMIN002697 Anopheles minimus AMIN002697 N 0.000
augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0 N 0.000
ASIM_0001695301 Anisakis simplex ASIM_0001695301 N 0.000
A_02867 Schistosoma haematobium A_02867 N 0.000
PPAI007703 Phlebotomus papatasi PPAI007703 N 0.000
ASIS022603 Anopheles sinensis ASIS022603 N 0.000
AQUA009532 Anopheles quadriannulatus AQUA009532 N 0.000
AATE008437 Anopheles atroparvus AATE008437 N 0.000
DICVIV_02945 Dictyocaulus viviparus DICVIV_02945 N 0.000
ECPE_0000358001 Echinostoma caproni ECPE_0000358001 N 0.000
EVEC_0000660801 Enterobius vermicularis EVEC_0000660801 N 0.000
nLs.2.1.2.g06018 Litomosoides sigmodontis nLs.2.1.2.g06018 N 0.000
nRc.2.0.1.g06912 Romanomermis culicivorax nRc.2.0.1.g06912 N 0.000
OFLC_0001516501 Onchocerca flexuosa OFLC_0001516501 N 0.000
PXEA_0000446101 Protopolystoma xenopodis PXEA_0000446101 N 0.000
scaffold37-EXSNAP2012.8 Pristionchus exspectatus scaffold37-EXSNAP2012.8 N 0.000
SCUD_0002097601 Schistosoma curassoni SCUD_0002097601 N 0.000
SROB_0001257001 Schistosoma rodhaini SROB_0001257001 N 0.000
TCNE_0001839401 Toxocara canis TCNE_0001839401 N 0.000
TRE_0000644601 Trichobilharzia regenti TRE_0000644601 N 0.000
ENSOARG00000007317 Ovis aries ENSOARG00000007317 N 0.000
Afo_R002915 Aptenodytes forsteri Afo_R002915 N 0.000
YQE_09155 Dendroctonus ponderosae YQE_09155 N 0.000
Ppa-cog-1 Pristionchus pacificus PPA04716 N 0.000
PHUM359870 Pediculus humanus PHUM359870 N 0.000
MCINX004710 Melitaea cinxia MCINX004710 N 0.000
KGM_13904 Danaus plexippus KGM_13904 N 0.000
ISCW014430 Ixodes scapularis ISCW014430 N 0.000
NKX6-2 Procavia capensis ENSPCAG00000000708 N 0.000
Hsal_06171--XP_001121097.1_APIME Harpegnathos saltator Hsal_06171--XP_001121097.1_APIME N 0.000
CPIJ001377 Culex quinquefasciatus CPIJ001377 N 0.000
CapteG6193 Capitella teleta CapteG6193 N 0.000
Bm5188 Brugia malayi Bm5188 N 0.000
BGIBMGA010051 Bombyx mori BGIBMGA010051 N 0.000
ACEP17328 Atta cephalotes ACEP17328 N 0.000
AAEL004033 Aedes aegypti AAEL004033 N 0.000
WUBG_08661 Wuchereria bancrofti WUBG_08661 N 0.000
AMEM013182 Anopheles merus AMEM013182 N 0.000
Myotis_brandtii_NKX6_10030510 Myotis brandtii Myotis_brandtii_NKX6_10030510 N 0.000
Ocbimv22025901m.g Octopus bimaculoides Ocbimv22025901m.g N 0.000
CLEC002616 Cimex lectularius CLEC002616 N 0.000
HHAL007703-PA Halyomorpha halys HHAL007703-PA N 0.000
LCUP008694 Lucilia cuprina LCUP008694 N 0.000
LDEC017209 Leptinotarsa decemlineata LDEC017209 N 0.000
Sjc_0111830 Schistosoma japonicum Sjc_0111830 N 0.000
AALB008452 Anopheles albimanus AALB008452 N 0.000
CpipJ_CPIJ001377 Culex pipiens CpipJ_CPIJ001377 N 0.000
ACUA026159 Anopheles culicifacies ACUA026159 N 0.000
ADIR006386 Anopheles dirus ADIR006386 N 0.000
AEPI002734 Anopheles epiroticus AEPI002734 N 0.000
AFAF005788 Anopheles farauti AFAF005788 N 0.000
AMAM013696 Anopheles maculatus AMAM013696 N 0.000
AMEC022035 Anopheles melas AMEC022035 N 0.000