Gfo_R008628 (Geospiza fortis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gfo_R008628 T226203_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NKX6-2
M05184_2.00 		Homo sapiens
DTAATTRN
NYAATTAH		 SELEX
Yin et al.(2017)
NKX6-2_eDBD_HT-SELEX 		0.377 1.000
NKX6-2
M05186_2.00 		Homo sapiens
WTAATKAB
VTMATTAW		 SELEX
Yin et al.(2017)
NKX6-2_FL_HT-SELEX 		0.377 1.000
NKX6-2
M10711_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX62_Q2 		0.377 1.000
NKX6-2
M05185_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
NKX6-2_eDBD_Methyl-HT-SELEX 		0.377 1.000
NKX6-2
M05187_2.00 		Homo sapiens
WTAATKAB
VTMATTAW		 SELEX
Yin et al.(2017)
NKX6-2_FL_Methyl-HT-SELEX 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R008628 Homeodomain 62 107

Links

Other Homeodomain family TFs
Other Geospiza fortis TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAPLG00000005538 Anas platyrhynchos ENSAPLG00000005538 I 0.867
ENSSHAG00000002937 Sarcophilus harrisii ENSSHAG00000002937 I 0.867
ENSECAG00000018325 Equus caballus ENSECAG00000018325 I 0.858
ENSOANG00000006212 Ornithorhynchus anatinus ENSOANG00000006212 I 0.858
ENSPFOG00000002761 Poecilia formosa ENSPFOG00000002761 I 0.858
NKX6-1 Sus scrofa ENSSSCG00000009232 I 0.858
ENSMEUG00000009353 Macropus eugenii ENSMEUG00000009353 I 0.849
NKX6-2 Procavia capensis ENSPCAG00000000708 N 0.849
AAEL004033 Aedes aegypti AAEL004033 N 0.846
SINV25324 Solenopsis invicta SINV25324 I 0.846
Ocbimv22025901m.g Octopus bimaculoides Ocbimv22025901m.g N 0.846
CLEC002616 Cimex lectularius CLEC002616 N 0.846
Sjc_0111830 Schistosoma japonicum Sjc_0111830 N 0.846
NKX6-1 Choloepus hoffmanni ENSCHOG00000005454 I 0.840
ENSMICG00000006922 Microcebus murinus ENSMICG00000006922 I 0.840
Myotis_brandtii_NKX6_10030510 Myotis brandtii Myotis_brandtii_NKX6_10030510 N 0.840
CpipJ_CPIJ001377 Culex pipiens CpipJ_CPIJ001377 N 0.829
ACEP17328 Atta cephalotes ACEP17328 N 0.829
BGIBMGA010051 Bombyx mori BGIBMGA010051 N 0.829
CapteG6193 Capitella teleta CapteG6193 N 0.829
CPIJ001377 Culex quinquefasciatus CPIJ001377 N 0.829
KGM_13904 Danaus plexippus KGM_13904 N 0.829
MCINX004710 Melitaea cinxia MCINX004710 N 0.829
PHUM359870 Pediculus humanus PHUM359870 N 0.829
YQE_09155 Dendroctonus ponderosae YQE_09155 N 0.829
Hsal_06171--XP_001121097.1_APIME Harpegnathos saltator Hsal_06171--XP_001121097.1_APIME N 0.829
HHAL007703-PA Halyomorpha halys HHAL007703-PA N 0.829
LCUP008694 Lucilia cuprina LCUP008694 N 0.829
LDEC017209 Leptinotarsa decemlineata LDEC017209 N 0.829
AALB008452 Anopheles albimanus AALB008452 N 0.829
AATE008437 Anopheles atroparvus AATE008437 N 0.829
ACUA026159 Anopheles culicifacies ACUA026159 N 0.829
ADIR006386 Anopheles dirus ADIR006386 N 0.829
AEPI002734 Anopheles epiroticus AEPI002734 N 0.829
AFAF005788 Anopheles farauti AFAF005788 N 0.829
AMAM013696 Anopheles maculatus AMAM013696 N 0.829
AMEC022035 Anopheles melas AMEC022035 N 0.829
AMEM013182 Anopheles merus AMEM013182 N 0.829
AQUA009532 Anopheles quadriannulatus AQUA009532 N 0.829
ASIS022603 Anopheles sinensis ASIS022603 N 0.829
PPAI007703 Phlebotomus papatasi PPAI007703 N 0.829
A_02867 Schistosoma haematobium A_02867 N 0.829
ECPE_0000358001 Echinostoma caproni ECPE_0000358001 N 0.829
SCUD_0002097601 Schistosoma curassoni SCUD_0002097601 N 0.829
SROB_0001257001 Schistosoma rodhaini SROB_0001257001 N 0.829
PXEA_0000446101 Protopolystoma xenopodis PXEA_0000446101 N 0.827
ANCDUO_24100 Ancylostoma duodenale ANCDUO_24100 N 0.820
ASIM_0001695301 Anisakis simplex ASIM_0001695301 N 0.820
TCNE_0001839401 Toxocara canis TCNE_0001839401 N 0.820
D917_05078 Trichinella nativa D917_05078 N 0.804
D917_08408 Trichinella nativa D917_08408 N 0.804
WUBG_08661 Wuchereria bancrofti WUBG_08661 N 0.802
DICVIV_02945 Dictyocaulus viviparus DICVIV_02945 N 0.802
ISCW014430 Ixodes scapularis ISCW014430 N 0.794
AMIN002697 Anopheles minimus AMIN002697 N 0.785
nRc.2.0.1.g06912 Romanomermis culicivorax nRc.2.0.1.g06912 N 0.784
Afo_R002915 Aptenodytes forsteri Afo_R002915 N 0.782
TRE_0000644601 Trichobilharzia regenti TRE_0000644601 N 0.781
Ppa-cog-1 Pristionchus pacificus PPA04716 N 0.773
EVEC_0000660801 Enterobius vermicularis EVEC_0000660801 N 0.773
nLs.2.1.2.g06018 Litomosoides sigmodontis nLs.2.1.2.g06018 N 0.769
augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0 N 0.763
Bm5188 Brugia malayi Bm5188 N 0.758
OFLC_0001516501 Onchocerca flexuosa OFLC_0001516501 N 0.758
scaffold37-EXSNAP2012.8 Pristionchus exspectatus scaffold37-EXSNAP2012.8 N 0.716
ENSOARG00000007317 Ovis aries ENSOARG00000007317 N 0.638
MESCA000156 Megaselia scalaris MESCA000156 I 0.617
Sjc_0024500 Schistosoma japonicum Sjc_0024500 I 0.606
SCUD_0002260901 Schistosoma curassoni SCUD_0002260901 I 0.606
SMTD_0002181901 Schistosoma mattheei SMTD_0002181901 I 0.606
ACUA001481 Anopheles culicifacies ACUA001481 I 0.601
ENSOANG00000008903 Ornithorhynchus anatinus ENSOANG00000008903 N 0.548