L889_g24082 (Steinernema feltiae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 L889_g24082 T234639_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.644 0.509
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.644 0.509
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.644 0.509
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.644 0.509
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.644 0.491
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.644 0.491
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.644 0.491
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.644 0.491
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.644 0.491
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.623 0.509
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.623 0.509
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.623 0.509
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.623 0.509
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.623 0.509
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.617 0.509
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.617 0.509
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.617 0.509
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.617 0.509
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.617 0.509
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.617 0.509
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.617 0.509
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.617 0.509
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.617 0.509
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.617 0.509
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.617 0.509
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.617 0.509
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.617 0.509
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.617 0.509
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.617 0.509
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.617 0.509
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.617 0.509
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.617 0.509
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.617 0.491
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.617 0.491
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.617 0.491
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.617 0.491
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.617 0.491
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.617 0.491
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.617 0.491
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.617 0.491
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.604 0.527
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L889_g24082.t1 Homeodomain 177 231

Links

Other Homeodomain family TFs
Other Steinernema feltiae TFs

525 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC087 Arabidopsis thaliana AT5G18270 D
Gorai.007G267700 Gossypium raimondii Gorai.007G267700 I
Pavir.Ba02955 Panicum virgatum Pavir.Ba02955 I
gene20686-v1.0-hybrid Fragaria vesca gene20686-v1.0-hybrid I
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I
Eucgr.A02074 Eucalyptus grandis Eucgr.A02074 I
Carubv10001373m.g Capsella rubella Carubv10001373m.g I
Cagra.0906s0022 Capsella grandiflora Cagra.0906s0022 I
Cucsa.002980 Cucumis sativus Cucsa.002980 I
cassava25877.m1 Manihot esculenta cassava25877.m1 I
Sb01g036590 Sorghum bicolor Sb01g036590 I
Cla012339 Citrullus lanatus Cla012339 I
Ca_08255 Cicer arietinum Ca_08255 I
TCM_026028 Theobroma cacao TCM_026028 I
TRIUR3_35152 Triticum urartu TRIUR3_35152 I
Traes_4AS_B95A1C3A1 Triticum aestivum Traes_4AS_B95A1C3A1 I
Traes_4BL_B92B51F5D Triticum aestivum Traes_4BL_B92B51F5D I
Traes_4DL_D84567626 Triticum aestivum Traes_4DL_D84567626 I
GSMUA_Achr3G09520_001 Musa acuminata GSMUA_Achr3G09520_001 I
chr1.CM0104.260.nc Lotus japonicus chr1.CM0104.260.nc I
BRADI1G63630 Brachypodium distachyon BRADI1G63630 I
Pavir.J13094 Panicum virgatum Pavir.J13094 I
F775_29256 Aegilops tauschii F775_29256 I
GLYMA16G04720 Glycine max GLYMA16G04720 I
GLYMA19G28515 Glycine max GLYMA19G28515 I
GRMZM2G031001 Zea mays GRMZM2G031001 I
GRMZM2G159500 Zea mays GRMZM2G159500 I
GSMUA_Achr5G07600_001 Musa acuminata GSMUA_Achr5G07600_001 I
GSMUA_Achr6G08600_001 Musa acuminata GSMUA_Achr6G08600_001 I
GSMUA_Achr6G32290_001 Musa acuminata GSMUA_Achr6G32290_001 I
GSMUA_Achr8G21470_001 Musa acuminata GSMUA_Achr8G21470_001 I
GSMUA_Achr9G16920_001 Musa acuminata GSMUA_Achr9G16920_001 I
Pavir.Ib01526 Panicum virgatum Pavir.Ib01526 I
Pavir.Eb00976 Panicum virgatum Pavir.Eb00976 I
Pavir.Bb02033 Panicum virgatum Pavir.Bb02033 I
OS03G0327100 Oryza sativa OS03G0327100 N
TRIUR3_20284 Triticum urartu TRIUR3_20284 N
OGLUM03G16080 Oryza glumaepatula OGLUM03G16080 N
BGIOSGA010816 Oryza indica BGIOSGA010816 N
F775_15511 Aegilops tauschii F775_15511 N
LPERR03G13930 Leersia perrieri LPERR03G13930 N
LPERR07G23450 Leersia perrieri LPERR07G23450 N
MLOC_64057 Hordeum vulgare MLOC_64057 N
MLOC_65400 Hordeum vulgare MLOC_65400 N
OB07G32150 Oryza brachyantha OB07G32150 N
OBART03G15920 Oryza barthii OBART03G15920 N
Traes_2BS_00566A85C Triticum aestivum Traes_2BS_00566A85C N
OLONG_022063 Oryza longistaminata OLONG_022063 N
ONIVA03G16900 Oryza nivara ONIVA03G16900 N
OPUNC03G15440 Oryza punctata OPUNC03G15440 N
ORGLA03G0152400 Oryza glaberrima ORGLA03G0152400 N
ORUFI03G16480 Oryza rufipogon ORUFI03G16480 N
Sb02g043270 Sorghum bicolor Sb02g043270 N
Si035639m.g Setaria italica Si035639m.g N
Traes_2AS_7AAACC26B Triticum aestivum Traes_2AS_7AAACC26B N