SVUK_0000214201 (Strongylus vulgaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SVUK_0000214201 T236597_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.673 0.458
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.673 0.458
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.673 0.458
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.615 0.292
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.615 0.292
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.615 0.292
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.615 0.292
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.615 0.292
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.615 0.292
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.615 0.292
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.615 0.292
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.615 0.292
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0000214201-mRNA-1 Homeodomain 41 88

Links

Other Homeodomain family TFs
Other Strongylus vulgaris TFs

890 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SCRM Arabidopsis thaliana AT3G26744 D 0.000
AMTR_s00016p00170610 Amborella trichopoda AMTR_s00016p00170610 I 0.000
AMTR_s00019p00254380 Amborella trichopoda AMTR_s00019p00254380 I 0.000
SCRM2 Arabidopsis thaliana AT1G12860 I 0.000
BGIOSGA000206 Oryza indica BGIOSGA000206 I 0.000
BGIOSGA007229 Oryza indica BGIOSGA007229 I 0.000
BGIOSGA035358 Oryza indica BGIOSGA035358 I 0.000
Bo00285s440 Brassica oleracea Bo00285s440 I 0.000
Bo5g016510 Brassica oleracea Bo5g016510 I 0.000
Bo7g083870 Brassica oleracea Bo7g083870 I 0.000
Bo8g065080 Brassica oleracea Bo8g065080 I 0.000
Bo9g008020 Brassica oleracea Bo9g008020 I 0.000
Bra016749 Brassica rapa Bra016749 I 0.000
Bra019794 Brassica rapa Bra019794 I 0.000
Bra025226 Brassica rapa Bra025226 I 0.000
Bra032947 Brassica rapa Bra032947 I 0.000
Bra034246 Brassica rapa Bra034246 I 0.000
BRADI2G59497 Brachypodium distachyon BRADI2G59497 I 0.000
BRADI3G01901 Brachypodium distachyon BRADI3G01901 I 0.000
BRADI3G01910 Brachypodium distachyon BRADI3G01910 I 0.000
BRADI4G17460 Brachypodium distachyon BRADI4G17460 I 0.000
F775_14780 Aegilops tauschii F775_14780 I 0.000
F775_15875 Aegilops tauschii F775_15875 I 0.000
ICE1 Arabidopsis lyrata fgenesh2_kg.5__441__AT3G26744.2 I 0.000
GLYMA04G37750 Glycine max GLYMA04G37750 I 0.000
GLYMA05G38530 Glycine max GLYMA05G38530 I 0.000
GLYMA06G17330 Glycine max GLYMA06G17330 I 0.000
GLYMA09G06770 Glycine max GLYMA09G06770 I 0.000
GLYMA13G00480 Glycine max GLYMA13G00480 I 0.000
GLYMA15G18070 Glycine max GLYMA15G18070 I 0.000
GLYMA16G05390 Glycine max GLYMA16G05390 I 0.000
GLYMA16G26291 Glycine max GLYMA16G26291 I 0.000
GLYMA17G06610 Glycine max GLYMA17G06610 I 0.000
GLYMA19G27483 Glycine max GLYMA19G27483 I 0.000
GRMZM2G033356 Zea mays GRMZM2G033356 I 0.000
GRMZM2G119823 Zea mays GRMZM2G119823 I 0.000
GRMZM2G172297 Zea mays GRMZM2G172297 I 0.000
GRMZM2G173534 Zea mays GRMZM2G173534 I 0.000
GSMUA_Achr10G12060_001 Musa acuminata GSMUA_Achr10G12060_001 I 0.000
GSMUA_Achr10G18380_001 Musa acuminata GSMUA_Achr10G18380_001 I 0.000
GSMUA_Achr10G23370_001 Musa acuminata GSMUA_Achr10G23370_001 I 0.000
GSMUA_Achr1G07330_001 Musa acuminata GSMUA_Achr1G07330_001 I 0.000
GSMUA_Achr1G07450_001 Musa acuminata GSMUA_Achr1G07450_001 I 0.000
GSMUA_Achr6G08070_001 Musa acuminata GSMUA_Achr6G08070_001 I 0.000
GSMUA_Achr7G16000_001 Musa acuminata GSMUA_Achr7G16000_001 I 0.000
LPERR01G37160 Leersia perrieri LPERR01G37160 I 0.000
LPERR11G11940 Leersia perrieri LPERR11G11940 I 0.000
MLOC_46407 Hordeum vulgare MLOC_46407 I 0.000
MLOC_52192 Hordeum vulgare MLOC_52192 I 0.000
MLOC_76805 Hordeum vulgare MLOC_76805 I 0.000
MTR_2g038040 Medicago truncatula MTR_2g038040 I 0.000
MTR_3g498695 Medicago truncatula MTR_3g498695 I 0.000
OBART01G42600 Oryza barthii OBART01G42600 I 0.000
OBART02G01550 Oryza barthii OBART02G01550 I 0.000
OBART11G15260 Oryza barthii OBART11G15260 I 0.000
OGLUM01G46870 Oryza glumaepatula OGLUM01G46870 I 0.000
OGLUM02G01420 Oryza glumaepatula OGLUM02G01420 I 0.000
OGLUM11G14700 Oryza glumaepatula OGLUM11G14700 I 0.000
OMERI01G39590 Oryza meridionalis OMERI01G39590 I 0.000
OMERI02G00890 Oryza meridionalis OMERI02G00890 I 0.000
OMERI11G12580 Oryza meridionalis OMERI11G12580 I 0.000
ONIVA01G48650 Oryza nivara ONIVA01G48650 I 0.000
ONIVA02G01430 Oryza nivara ONIVA02G01430 I 0.000
ONIVA12G10770 Oryza nivara ONIVA12G10770 I 0.000
OPUNC01G41620 Oryza punctata OPUNC01G41620 I 0.000
OPUNC02G01010 Oryza punctata OPUNC02G01010 I 0.000
OPUNC11G12640 Oryza punctata OPUNC11G12640 I 0.000
ORGLA01G0363500 Oryza glaberrima ORGLA01G0363500 I 0.000
ORGLA02G0014200 Oryza glaberrima ORGLA02G0014200 I 0.000
ORGLA11G0129200 Oryza glaberrima ORGLA11G0129200 I 0.000
ORUFI01G46010 Oryza rufipogon ORUFI01G46010 I 0.000
ORUFI02G01530 Oryza rufipogon ORUFI02G01530 I 0.000
ORUFI11G16280 Oryza rufipogon ORUFI11G16280 I 0.000
OS01G0928000 Oryza sativa OS01G0928000 I 0.000
TDR Oryza sativa OS02G0120500 I 0.000
OS11G0523700 Oryza sativa OS11G0523700 I 0.000
PGSC0003DMG400004087 Solanum tuberosum PGSC0003DMG400004087 I 0.000
PGSC0003DMG400008195 Solanum tuberosum PGSC0003DMG400008195 I 0.000
PGSC0003DMG400014246 Solanum tuberosum PGSC0003DMG400014246 I 0.000
PGSC0003DMG401028788 Solanum tuberosum PGSC0003DMG401028788 I 0.000
AMS Populus trichocarpa POPTR_0009s13860 I 0.000
POPTR_0012s10780 Populus trichocarpa POPTR_0012s10780 I 0.000
POPTR_0015s11650 Populus trichocarpa POPTR_0015s11650 I 0.000
POPTR_0018s13860 Populus trichocarpa POPTR_0018s13860 I 0.000
PRUPE_ppa002978mg Prunus persica PRUPE_ppa002978mg I 0.000
PRUPE_ppa005038mg Prunus persica PRUPE_ppa005038mg I 0.000
PRUPE_ppa010972mg Prunus persica PRUPE_ppa010972mg I 0.000
PRUPE_ppa018220mg Prunus persica PRUPE_ppa018220mg I 0.000
PRUPE_ppa022211mg Prunus persica PRUPE_ppa022211mg I 0.000
Sb03g044660 Sorghum bicolor Sb03g044660 I 0.000
Sb04g001650 Sorghum bicolor Sb04g001650 I 0.000
Sb05g019530 Sorghum bicolor Sb05g019530 I 0.000
SELMODRAFT_119431 Selaginella moellendorffii SELMODRAFT_119431 I 0.000
SELMODRAFT_138758 Selaginella moellendorffii SELMODRAFT_138758 I 0.000
SELMODRAFT_16038 Selaginella moellendorffii SELMODRAFT_16038 I 0.000
SELMODRAFT_16039 Selaginella moellendorffii SELMODRAFT_16039 I 0.000
SELMODRAFT_430203 Selaginella moellendorffii SELMODRAFT_430203 I 0.000
SELMODRAFT_451590 Selaginella moellendorffii SELMODRAFT_451590 I 0.000
SELMODRAFT_75047 Selaginella moellendorffii SELMODRAFT_75047 I 0.000
SELMODRAFT_91237 Selaginella moellendorffii SELMODRAFT_91237 I 0.000
SELMODRAFT_94010 Selaginella moellendorffii SELMODRAFT_94010 I 0.000
Si001874m.g Setaria italica Si001874m.g I 0.000
Si006500m.g Setaria italica Si006500m.g I 0.000
Si019518m.g Setaria italica Si019518m.g I 0.000
Si026212m.g Setaria italica Si026212m.g I 0.000
Solyc03g118310.2 Solanum lycopersicum Solyc03g118310.2 I 0.000
Solyc06g068870.2 Solanum lycopersicum Solyc06g068870.2 I 0.000
Solyc07g018010.2 Solanum lycopersicum Solyc07g018010.2 I 0.000
Solyc08g062780.1 Solanum lycopersicum Solyc08g062780.1 I 0.000
TCM_006602 Theobroma cacao TCM_006602 I 0.000
TCM_014741 Theobroma cacao TCM_014741 I 0.000
TCM_017336 Theobroma cacao TCM_017336 I 0.000
TCM_039471 Theobroma cacao TCM_039471 I 0.000
TRAES3BF001100060CFD_g Triticum aestivum TRAES3BF001100060CFD_g I 0.000
Traes_4DS_7B0E8D459 Triticum aestivum Traes_4DS_7B0E8D459 I 0.000
Traes_6AS_4C2F64614 Triticum aestivum Traes_6AS_4C2F64614 I 0.000
Traes_6AS_66A98BA55 Triticum aestivum Traes_6AS_66A98BA55 I 0.000
Traes_7AL_ACAC47D88 Triticum aestivum Traes_7AL_ACAC47D88 I 0.000
Traes_7BL_BF5300D88 Triticum aestivum Traes_7BL_BF5300D88 I 0.000
Traes_7DL_2A7EF919F Triticum aestivum Traes_7DL_2A7EF919F I 0.000
TRIUR3_16046 Triticum urartu TRIUR3_16046 I 0.000
TRIUR3_17003 Triticum urartu TRIUR3_17003 I 0.000
VIT_01s0244g00130 Vitis vinifera VIT_01s0244g00130 I 0.000
VIT_11s0052g00100 Vitis vinifera VIT_11s0052g00100 I 0.000
VIT_14s0068g01200 Vitis vinifera VIT_14s0068g01200 I 0.000
VIT_17s0000g00330 Vitis vinifera VIT_17s0000g00330 I 0.000
Ca_01394 Cicer arietinum Ca_01394 I 0.000
Cla002682 Citrullus lanatus Cla002682 I 0.000
Cla003283 Citrullus lanatus Cla003283 I 0.000
Cla016068 Citrullus lanatus Cla016068 I 0.000
Cla023112 Citrullus lanatus Cla023112 I 0.000
Pm008898 Prunus mume Pm008898 I 0.000
Pm016093 Prunus mume Pm016093 I 0.000
Pm020879 Prunus mume Pm020879 I 0.000
Pm024587 Prunus mume Pm024587 I 0.000
30147.m014419 Ricinus communis 30147.m014419 I 0.000
30198.m000869 Ricinus communis 30198.m000869 I 0.000
cassava17838.valid.m1 Manihot esculenta cassava17838.valid.m1 I 0.000
cassava2551.valid.m1 Manihot esculenta cassava2551.valid.m1 I 0.000
cassava2552.valid.m1 Manihot esculenta cassava2552.valid.m1 I 0.000
cassava2997.m1 Manihot esculenta cassava2997.m1 I 0.000
cassava37254.valid.m1 Manihot esculenta cassava37254.valid.m1 I 0.000
Cucsa.010660 Cucumis sativus Cucsa.010660 I 0.000
Cucsa.088960 Cucumis sativus Cucsa.088960 I 0.000
Cucsa.134750 Cucumis sativus Cucsa.134750 I 0.000
Cucsa.156040 Cucumis sativus Cucsa.156040 I 0.000
e_gw1.25.105.1 Physcomitrella patens e_gw1.25.105.1 I 0.000
estExt_fgenesh1_pg.C_1590022 Physcomitrella patens estExt_fgenesh1_pg.C_1590022 I 0.000
estExt_fgenesh1_pg.C_300202 Physcomitrella patens estExt_fgenesh1_pg.C_300202 I 0.000
estExt_Genewise1.C_510113 Physcomitrella patens estExt_Genewise1.C_510113 I 0.000
estExt_gwp_gw1.C_1820005 Physcomitrella patens estExt_gwp_gw1.C_1820005 I 0.000
fgenesh1_pg.scaffold_1000274 Physcomitrella patens fgenesh1_pg.scaffold_1000274 I 0.000
mgf012194m Mimulus guttatus mgf012194m I 0.000
mgf015974m Mimulus guttatus mgf015974m I 0.000
mgf016462m Mimulus guttatus mgf016462m I 0.000
mgf018455m Mimulus guttatus mgf018455m I 0.000
mgf019723m Mimulus guttatus mgf019723m I 0.000
mgf024029m Mimulus guttatus mgf024029m I 0.000
Aquca_018_00039 Aquilegia coerulea Aquca_018_00039 I 0.000
Aquca_019_00147 Aquilegia coerulea Aquca_019_00147 I 0.000
Aquca_100_00035 Aquilegia coerulea Aquca_100_00035 I 0.000
Bostr.0556s0344 Boechera stricta Bostr.0556s0344 I 0.000
Bostr.13671s0164 Boechera stricta Bostr.13671s0164 I 0.000
Cagra.0568s0207 Capsella grandiflora Cagra.0568s0207 I 0.000
Cagra.23157s0001 Capsella grandiflora Cagra.23157s0001 I 0.000
Carubv10009081m.g Capsella rubella Carubv10009081m.g I 0.000
Carubv10017099m.g Capsella rubella Carubv10017099m.g I 0.000
Ciclev10009285m.g Citrus clementina Ciclev10009285m.g I 0.000
Ciclev10015052m.g Citrus clementina Ciclev10015052m.g I 0.000
Eucgr.C02208 Eucalyptus grandis Eucgr.C02208 I 0.000
Eucgr.G01938 Eucalyptus grandis Eucgr.G01938 I 0.000
evm.TU.supercontig_1024.1 Carica papaya evm.TU.supercontig_1024.1 I 0.000
evm.TU.supercontig_70.77 Carica papaya evm.TU.supercontig_70.77 I 0.000
gene06435-v1.0-hybrid Fragaria vesca gene06435-v1.0-hybrid I 0.000
gene17273-v1.0-hybrid Fragaria vesca gene17273-v1.0-hybrid I 0.000
gene23715-v1.0-hybrid Fragaria vesca gene23715-v1.0-hybrid I 0.000
gene23716-v1.0-hybrid Fragaria vesca gene23716-v1.0-hybrid I 0.000
Gorai.001G275600 Gossypium raimondii Gorai.001G275600 I 0.000
Gorai.007G044800 Gossypium raimondii Gorai.007G044800 I 0.000
Gorai.007G072600 Gossypium raimondii Gorai.007G072600 I 0.000
Gorai.008G036900 Gossypium raimondii Gorai.008G036900 I 0.000
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I 0.000
Gorai.013G242800 Gossypium raimondii Gorai.013G242800 I 0.000
Lus10006951.g Linum usitatissimum Lus10006951.g I 0.000
Lus10032542.g Linum usitatissimum Lus10032542.g I 0.000
Lus10043199.g Linum usitatissimum Lus10043199.g I 0.000
MDP0000133262 Malus domestica MDP0000133262 I 0.000
MDP0000243628 Malus domestica MDP0000243628 I 0.000
MDP0000247912 Malus domestica MDP0000247912 I 0.000
MDP0000304669 Malus domestica MDP0000304669 I 0.000
MDP0000318229 Malus domestica MDP0000318229 I 0.000
MDP0000662999 Malus domestica MDP0000662999 I 0.000
orange1.1g011370m.g Citrus sinensis orange1.1g011370m.g I 0.000
orange1.1g025665m.g Citrus sinensis orange1.1g025665m.g I 0.000
orange1.1g047004m.g Citrus sinensis orange1.1g047004m.g I 0.000
Pavir.Ab00204 Panicum virgatum Pavir.Ab00204 I 0.000
Pavir.Ea03858 Panicum virgatum Pavir.Ea03858 I 0.000
Pavir.Eb03736 Panicum virgatum Pavir.Eb03736 I 0.000
Pavir.Hb00982 Panicum virgatum Pavir.Hb00982 I 0.000
SapurV1A.0140s0210 Salix purpurea SapurV1A.0140s0210 I 0.000
SapurV1A.0218s0460 Salix purpurea SapurV1A.0218s0460 I 0.000
SapurV1A.0517s0250 Salix purpurea SapurV1A.0517s0250 I 0.000
SapurV1A.0672s0200 Salix purpurea SapurV1A.0672s0200 I 0.000
SapurV1A.0774s0030 Salix purpurea SapurV1A.0774s0030 I 0.000
Thhalv10004059m.g Eutrema salsugineum Thhalv10004059m.g I 0.000
Thhalv10007566m.g Eutrema salsugineum Thhalv10007566m.g I 0.000
PK03241.1 Cannabis sativa PK03241.1 I 0.000
PK06841.1 Cannabis sativa PK06841.1 I 0.000
PK06940.1 Cannabis sativa PK06940.1 I 0.000
chr1.CM1880.50.nc Lotus japonicus chr1.CM1880.50.nc I 0.000
LjSGA_024382.1 Lotus japonicus LjSGA_024382.1 I 0.000
PDK_20s1347451g001 Phoenix dactylifera PDK_20s1347451g001 I 0.000
AT5G57150 Arabidopsis thaliana AT5G57150 N 0.000
BGIOSGA015389 Oryza indica BGIOSGA015389 N 0.000
BGIOSGA040642 Oryza indica BGIOSGA040642 N 0.000
Bo3g019430 Brassica oleracea Bo3g019430 N 0.000
Bo9g130890 Brassica oleracea Bo9g130890 N 0.000
Bra002756 Brassica rapa Bra002756 N 0.000
Bra006831 Brassica rapa Bra006831 N 0.000
Bra020462 Brassica rapa Bra020462 N 0.000
BRADI5G05110 Brachypodium distachyon BRADI5G05110 N 0.000
fgenesh2_kg.8__1627__AT5G57150.1 Arabidopsis lyrata fgenesh2_kg.8__1627__AT5G57150.1 N 0.000
GRMZM2G042893 Zea mays GRMZM2G042893 N 0.000
GRMZM2G042895 Zea mays GRMZM2G042895 N 0.000
GRMZM2G139372 Zea mays GRMZM2G139372 N 0.000
GSMUA_Achr6G30900_001 Musa acuminata GSMUA_Achr6G30900_001 N 0.000
LPERR04G04520 Leersia perrieri LPERR04G04520 N 0.000
MLOC_62844 Hordeum vulgare MLOC_62844 N 0.000
OMERI03G04020 Oryza meridionalis OMERI03G04020 N 0.000
ONIVA01G07150 Oryza nivara ONIVA01G07150 N 0.000
ONIVA01G07170 Oryza nivara ONIVA01G07170 N 0.000
OPUNC04G05630 Oryza punctata OPUNC04G05630 N 0.000
ORUFI04G07860 Oryza rufipogon ORUFI04G07860 N 0.000
OS04G0301500 Oryza sativa OS04G0301500 N 0.000
POPTR_0006s07440 Populus trichocarpa POPTR_0006s07440 N 0.000
Sb07g004190 Sorghum bicolor Sb07g004190 N 0.000
Si010413m.g Setaria italica Si010413m.g N 0.000
Si010812m.g Setaria italica Si010812m.g N 0.000
Traes_2AL_411B944D6 Triticum aestivum Traes_2AL_411B944D6 N 0.000
Traes_2BL_8FED05903 Triticum aestivum Traes_2BL_8FED05903 N 0.000
Traes_2DL_DE3909A32 Triticum aestivum Traes_2DL_DE3909A32 N 0.000
Cla010249 Citrullus lanatus Cla010249 N 0.000
Cla019147 Citrullus lanatus Cla019147 N 0.000
Pm020878 Prunus mume Pm020878 N 0.000
Cucsa.282100 Cucumis sativus Cucsa.282100 N 0.000
Cucsa.286080 Cucumis sativus Cucsa.286080 N 0.000
Bostr.26833s0543 Boechera stricta Bostr.26833s0543 N 0.000
Cagra.1569s0024 Capsella grandiflora Cagra.1569s0024 N 0.000
evm.TU.supercontig_115.71 Carica papaya evm.TU.supercontig_115.71 N 0.000
Pavir.Ga02255 Panicum virgatum Pavir.Ga02255 N 0.000
Pavir.Ga02256 Panicum virgatum Pavir.Ga02256 N 0.000
Pavir.Gb02205 Panicum virgatum Pavir.Gb02205 N 0.000
SapurV1A.0001s2810 Salix purpurea SapurV1A.0001s2810 N 0.000
Thhalv10014506m.g Eutrema salsugineum Thhalv10014506m.g N 0.000