TTRE_0000023201 (Trichuris trichiura)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 TTRE_0000023201 T237152_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Abd-B
M00554_2.00 		Drosophila melanogaster
NWTWAYDDNN
NNHHRTWAWN		 PBM
Busser et al.(2012a)
Abd-B 		0.832 0.895
Abd-B
M03772_2.00 		Drosophila melanogaster
DRTCRTAAAWH
DWTTTAYGAYH		 SELEX
Nitta et al.(2015)
Abd-B_1 		0.832 0.895
Abd-B
M03773_2.00 		Drosophila melanogaster
DTTTTATKRCY
RGYMATAAAAH		 SELEX
Nitta et al.(2015)
Abd-B_2 		0.832 0.895
Abd-B
M03774_2.00 		Drosophila melanogaster
NKCARYAACGACYW
WRGTCGTTRYTGMN		 SELEX
Nitta et al.(2015)
Abd-B_3 		0.832 0.895
Abd-B
M03775_2.00 		Drosophila melanogaster
DTTTWATGKSTTTY
RAAASMCATWAAAH		 SELEX
Nitta et al.(2015)
Abd-B_4 		0.832 0.895
Abd-B
M06476_2.00 		Drosophila melanogaster
TTTATKR
YMATAAA		 B1H
Mathelier et al.(2014)
MA0165.1 		0.832 0.895
Abd-B
M06211_2.00 		Drosophila melanogaster
YCATAAAA
TTTTATGR		 B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015 		0.832 0.895
Abd-B
M09672_2.00 		Drosophila melanogaster
YMATAAAAHH
DDTTTTATKR		 Misc
Kulakovskiy et al.(2009)
Abd-B 		0.832 0.895
Abd-B
M10779_2.00 		Drosophila melanogaster
VSNTTDATKRCNNN
NNNGYMATHAANSB		 Transfac
Matys et al.(2006)
I$ABDB_01 		0.832 0.895
Abd-B
M10780_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$ABDB_Q6 		0.832 0.895
Hoxd12_CONSTRUCT
M00538_2.00 		PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN		 PBM
Berger et al.(2008)
Hoxd12_3481 		0.721 0.649
HOXD12
M03206_2.00 		Homo sapiens
SYAATAAAA
TTTTATTRS		 SELEX
Jolma et al.(2013)
HOXD12_1 		0.721 0.649
HOXD12
M03207_2.00 		Homo sapiens
RVTCGTAAAAH
DTTTTACGABY		 SELEX
Jolma et al.(2013)
HOXD12_2 		0.721 0.649
HOXD12
M03208_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Jolma et al.(2013)
HOXD12_3 		0.721 0.649
HOXD12
M03209_2.00 		Homo sapiens
DTTWATYRC
GYRATWAAH		 SELEX
Jolma et al.(2013)
HOXD12_4 		0.721 0.649
HOXD12
M05279_2.00 		Homo sapiens
NKTWACGAYN
NRTCGTWAMN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX 		0.721 0.649
HOXD12
M05280_2.00 		Homo sapiens
NRTCGTAAAH
DTTTACGAYN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX 		0.721 0.649
Hoxc12
M00508_2.00 		Mus musculus
NDTWAYNDBN
NVHNRTWAHN		 PBM
Berger et al.(2008)
Hoxc12_3480 		0.721 0.614
HOXC12
M03135_2.00 		Homo sapiens
TTTTATTRY
RYAATAAAA		 SELEX
Jolma et al.(2013)
HOXC12_1 		0.721 0.614
HOXC12
M03136_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Jolma et al.(2013)
HOXC12_2 		0.721 0.614
HOXC12
M05083_2.00 		Homo sapiens
NGYAATAAAAN
NTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1 		0.721 0.614
HOXC12
M05084_2.00 		Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2 		0.721 0.614
HOXC12
M05085_2.00 		Homo sapiens
NGYAATAAAAH
DTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1 		0.721 0.614
HOXC12
M05086_2.00 		Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2 		0.721 0.614
Q9U9Y9_LINUN
M02218_2.00 		Lingula unguis
NNTAATWAATN
NATTWATTANN		 PBM
Weirauch et al.(2014)
pTH5504 		0.721 0.667
HXD12_HETFR
M02196_2.00 		Heterodontus francisci
TTWATKRC
GYMATWAA		 PBM
Weirauch et al.(2014)
pTH6533 		0.688 0.632
Hoxd9
M03282_2.00 		Mus musculus
TTTWATKKB
VMMATWAAA		 SELEX
Jolma et al.(2013)
Hoxd9_1 		0.674 0.772
Hoxd9
M03283_2.00 		Mus musculus
DWTTWATKRY
RYMATWAAWH		 SELEX
Jolma et al.(2013)
Hoxd9_2 		0.674 0.772
Hoxd9
M03284_2.00 		Mus musculus
DTTWAYGRB
VYCRTWAAH		 SELEX
Jolma et al.(2013)
Hoxd9_3 		0.674 0.772
HOXC9
M05331_2.00 		Homo sapiens
GTCGTAAAAN
NTTTTACGAC		 SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1 		0.674 0.772
HOXC9
M05332_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2 		0.674 0.772
HOXD9
M05104_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1 		0.674 0.772
HOXD9
M05105_2.00 		Homo sapiens
RTCRTAAAWN
NWTTTAYGAY		 SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2 		0.674 0.772
HOXD9
M05108_2.00 		Homo sapiens
RTCGTAAAWN
NWTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1 		0.674 0.772
HOXD9
M05109_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2 		0.674 0.772
HOXC9
M09161_2.00 		Homo sapiens
HTTWATKGCH
DGCMATWAAD		 Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C 		0.674 0.772
HOXD9
M10686_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD9_Q2 		0.674 0.772
HOXC9
M05333_2.00 		Homo sapiens
RTCGTAAAHN
NDTTTACGAY		 SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1 		0.674 0.772
HOXC9
M05334_2.00 		Homo sapiens
NTTTWATKRC
GYMATWAAAN		 SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2 		0.674 0.772
HOXD9
M05106_2.00 		Homo sapiens
NNTTWATKRC
GYMATWAANN		 SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1 		0.674 0.772
HOXD9
M05107_2.00 		Homo sapiens
RTCGTAAANN
NNTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2 		0.674 0.772
HOXD9
M05110_2.00 		Homo sapiens
RTCGTAAANN
NNTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1 		0.674 0.772
HOXD9
M05111_2.00 		Homo sapiens
NDTTWATKRC
GYMATWAAHN		 SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2 		0.674 0.772
Hoxb9
M00410_2.00 		Mus musculus
NTTWAYDDNN
NNHHRTWAAN		 PBM
Berger et al.(2008)
Hoxb9_3413 		0.674 0.754
Hoxa9
M00475_2.00 		Mus musculus
NNDDBNNN
NNNVHHNN		 PBM
Berger et al.(2008)
Hoxa9_2622 		0.674 0.754
HOXA9
M03085_2.00 		Homo sapiens
NNDTTWAYGAYN
NRTCRTWAAHNN		 SELEX
Jolma et al.(2013)
HOXA10_1 		0.674 0.754
HOXA9
M03086_2.00 		Homo sapiens
NDTTWATKRYN
NRYMATWAAHN		 SELEX
Jolma et al.(2013)
HOXA10_2 		0.674 0.754
HOXA9
M04932_2.00 		Homo sapiens
NNDWWABKRC
GYMVTWWHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1 		0.674 0.754
HOXA9
M04933_2.00 		Homo sapiens
NNDTWAYGRB
VYCRTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2 		0.674 0.754
HOXB9
M05289_2.00 		Homo sapiens
RTCRTAAAWN
NWTTTAYGAY		 SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1 		0.674 0.754
HOXB9
M05290_2.00 		Homo sapiens
NTTTWATKRC
GYMATWAAAN		 SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2 		0.674 0.754
Hoxa9
M08138_2.00 		Mus musculus
TGATTKATKRB
VYMATMAATCA		 ChIP-seq
Mathelier et al.(2014)
MA0594.1 		0.674 0.754
HOXA9
M09130_2.00 		Homo sapiens
DCATAAAYYRBH
DVYRRTTTATGH		 Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C 		0.674 0.754
HOXA9
M09131_2.00 		Homo sapiens
HHATAAATCAH
DTGATTTATDD		 Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B 		0.674 0.754
Hoxa9
M09203_2.00 		Mus musculus
HHATAAATCAH
DTGATTTATDD		 Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B 		0.674 0.754
Hoxa9
M09575_2.00 		Mus musculus
WGATTKATDRBY
RVYHATMAATCW		 Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509 		0.674 0.754
HOXA9
M10642_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA10_Q6 		0.674 0.754
HOXA9
M10643_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_04 		0.674 0.754
HOXA9
M10644_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_Q5_01 		0.674 0.754
HOXA9
M10645_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_Q5 		0.674 0.754
HOXB9
M05291_2.00 		Homo sapiens
GTCGTAAAHB
VDTTTACGAC		 SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX 		0.674 0.754
HOXA9
M04934_2.00 		Homo sapiens
NNDTWAYKRC
GYMRTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1 		0.674 0.754
HOXA9
M04935_2.00 		Homo sapiens
NNDTWACGAY
RTCGTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2 		0.674 0.754
Hoxc9
M00470_2.00 		Mus musculus
NGTAATWAAN
NTTWATTACN		 PBM
Berger et al.(2008)
Hoxc9_2367 		0.666 0.754
Hoxc9
M08137_2.00 		Mus musculus
NWGATTTATDGSH
DSCHATAAATCWN		 ChIP-seq
Mathelier et al.(2014)
MA0485.1 		0.666 0.754
Hoxc9
M09574_2.00 		Mus musculus
TGATTTATDGCH
DGCHATAAATCA		 Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812 		0.666 0.754
Hoxa10
M00382_2.00 		Mus musculus
NHWAYNNNN
NNNNRTWDN		 PBM
Berger et al.(2008)
Hoxa10_2318 		0.658 0.719
HOXA10
M05394_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1 		0.658 0.719
HOXA10
M05395_2.00 		Homo sapiens
NTTTTATKRCY
RGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2 		0.658 0.719
HOXA10
M05398_2.00 		Homo sapiens
NRTCRTWAANN
NNTTWAYGAYN		 SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1 		0.658 0.719
HOXA10
M05399_2.00 		Homo sapiens
NNTTWATKRCN
NGYMATWAANN		 SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2 		0.658 0.719
Hoxa10
M09170_2.00 		Mus musculus
DCATAAAYYRBH
DVYRRTTTATGH		 Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C 		0.658 0.719
Hoxa10
M10763_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA10_Q5 		0.658 0.719
HOXA10
M05396_2.00 		Homo sapiens
NGTCGTAAAWN
NWTTTACGACN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1 		0.658 0.719
HOXA10
M05397_2.00 		Homo sapiens
NTTTTATKRCB
VGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2 		0.658 0.719
HOXA10
M05400_2.00 		Homo sapiens
NRTCGTWAANN
NNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1 		0.658 0.719
HOXA10
M05401_2.00 		Homo sapiens
NNTTWATKRYN
NRYMATWAANN		 SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2 		0.658 0.719
Hoxd10
M00509_2.00 		Mus musculus
NNNNNNNN
NNNNNNNN		 PBM
Berger et al.(2008)
Hoxd10_2368 		0.658 0.702
HOXD10
M05112_2.00 		Homo sapiens
NKTTTATKRC
GYMATAAAMN		 SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1 		0.658 0.702
HOXD10
M05113_2.00 		Homo sapiens
RTCGTAAAHN
NDTTTACGAY		 SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2 		0.658 0.702
HOXD10
M05116_2.00 		Homo sapiens
RGTCGTAAAAH
DTTTTACGACY		 SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1 		0.658 0.702
HOXD10
M05117_2.00 		Homo sapiens
RRYMATAAAAH
DTTTTATKRYY		 SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2 		0.658 0.702
HOXD10
M10687_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD10_Q2 		0.658 0.702
HOXD10
M10688_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD10_Q6 		0.658 0.702
HOXD10
M05114_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1 		0.658 0.702
HOXD10
M05115_2.00 		Homo sapiens
GTCGTAAAHN
NDTTTACGAC		 SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2 		0.658 0.702
HOXD10
M05118_2.00 		Homo sapiens
VGTCGTAAAAH
DTTTTACGACB		 SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1 		0.658 0.702
HOXD10
M05119_2.00 		Homo sapiens
DGYAATAAAAH
DTTTTATTRCH		 SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2 		0.658 0.702
Hoxc10
M00421_2.00 		Mus musculus
TTWATKAB
VTMATWAA		 PBM
Berger et al.(2008)
Hoxc10_2779 		0.646 0.684
HOXC10
M03228_2.00 		Homo sapiens
DTTTWATKDB
VHMATWAAAH		 SELEX
Jolma et al.(2013)
HOXC10_1 		0.646 0.684
HOXC10
M03229_2.00 		Homo sapiens
NNTTWATKRB
VYMATWAANN		 SELEX
Jolma et al.(2013)
HOXC10_2 		0.646 0.684
HOXC10
M03230_2.00 		Homo sapiens
NWTTWAYGAB
VTCRTWAAWN		 SELEX
Jolma et al.(2013)
HOXC10_3 		0.646 0.684
Hoxc10
M03252_2.00 		Mus musculus
DTTTWAYGAY
RTCRTWAAAH		 SELEX
Jolma et al.(2013)
Hoxc10_1 		0.646 0.684
Hoxc10
M03253_2.00 		Mus musculus
DTTTWATKRY
RYMATWAAAH		 SELEX
Jolma et al.(2013)
Hoxc10_2 		0.646 0.684
HOXC10
M05335_2.00 		Homo sapiens
NDTTTATKRCN
NGYMATAAAHN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1 		0.646 0.684
HOXC10
M05336_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2 		0.646 0.684
HOXC10
M05339_2.00 		Homo sapiens
NTTTTATKRCN
NGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1 		0.646 0.684
HOXC10
M05340_2.00 		Homo sapiens
NRTCGTAAAWN
NWTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2 		0.646 0.684
HOXC10
M05337_2.00 		Homo sapiens
NTTTTATKRCN
NGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1 		0.646 0.684
HOXC10
M05338_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2 		0.646 0.684
HOXC10
M05341_2.00 		Homo sapiens
DTTTTATKRCH
DGYMATAAAAH		 SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1 		0.646 0.684
HOXC10
M05342_2.00 		Homo sapiens
VGTCGTAAAHN
NDTTTACGACB		 SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2 		0.646 0.684
Hoxb6
M00381_2.00 		Mus musculus
NNDHNNN
NNNDHNN		 PBM
Berger et al.(2008)
Hoxb6_3428 		0.620 0.667
HOXB6
M04999_2.00 		Homo sapiens
NTAATKRY
RYMATTAN		 SELEX
Yin et al.(2017)
HOXB6_eDBD_HT-SELEX 		0.620 0.667
HOXB6
M05000_2.00 		Homo sapiens
HTAAYGAY
RTCRTTAD		 SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_1 		0.620 0.667
HOXB6
M05001_2.00 		Homo sapiens
NTWATKRB
VYMATWAN		 SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_2 		0.620 0.667
Hoxd11
M00493_2.00 		Mus musculus
DDDNNNNN
NNNNNHHH		 PBM
Berger et al.(2008)
Hoxd11_3873 		0.620 0.702
HOXD11
M03139_2.00 		Homo sapiens
RTCGTAAAWH
DWTTTACGAY		 SELEX
Jolma et al.(2013)
HOXD11_1 		0.620 0.702
HOXD11
M03140_2.00 		Homo sapiens
TTTWATKRBH
DVYMATWAAA		 SELEX
Jolma et al.(2013)
HOXD11_2 		0.620 0.702
HOXD11
M05120_2.00 		Homo sapiens
NRTCGTWAANNDTWAH
DTWAHNNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX 		0.620 0.702
HOXD11
M05121_2.00 		Homo sapiens
NRTCGTWAAHNDTWAH
DTWAHNDTTWACGAYN		 SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX 		0.620 0.702
Hoxa11
M00474_2.00 		Mus musculus
NNHNHNNNN
NNNNDNDNN		 PBM
Berger et al.(2008)
Hoxa11_2218 		0.620 0.684
Hoxa11
M03274_2.00 		Mus musculus
NNDTTWAYGABN
NVTCRTWAAHNN		 SELEX
Jolma et al.(2013)
Hoxa11_1 		0.620 0.684
Hoxa11
M03275_2.00 		Mus musculus
NDTTWATKRNN
NNYMATWAAHN		 SELEX
Jolma et al.(2013)
Hoxa11_2 		0.620 0.684
HOXA11
M04897_2.00 		Homo sapiens
VGTCGTAAAWH
DWTTTACGACB		 SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1 		0.620 0.684
HOXA11
M04898_2.00 		Homo sapiens
DDTTWATKRSN
NSYMATWAAHH		 SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2 		0.620 0.684
HOXA11
M04899_2.00 		Homo sapiens
NRTCGTAAAWH
DWTTTACGAYN		 SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1 		0.620 0.684
HOXA11
M04900_2.00 		Homo sapiens
DYTTTATKRCH
DGYMATAAARH		 SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2 		0.620 0.684
Hoxc11
M00390_2.00 		Mus musculus
NTTWAYDDBN
NVHHRTWAAN		 PBM
Berger et al.(2008)
Hoxc11_3718 		0.620 0.667
HOXC11
M03131_2.00 		Homo sapiens
NWTTWAYGAYH
DRTCRTWAAWN		 SELEX
Jolma et al.(2013)
HOXC11_1 		0.620 0.667
HOXC11
M03132_2.00 		Homo sapiens
NWTTWATKRBH
DVYMATWAAWN		 SELEX
Jolma et al.(2013)
HOXC11_2 		0.620 0.667
HOXC11
M03133_2.00 		Homo sapiens
DRTCGTWAAWN
NWTTWACGAYH		 SELEX
Jolma et al.(2013)
HOXC11_3 		0.620 0.667
HOXC11
M03134_2.00 		Homo sapiens
NTTTTATKRBN
NVYMATAAAAN		 SELEX
Jolma et al.(2013)
HOXC11_4 		0.620 0.667
HOXC11
M05075_2.00 		Homo sapiens
NDTTWACGAYN
NRTCGTWAAHN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1 		0.620 0.667
HOXC11
M05076_2.00 		Homo sapiens
NWTTWATKRCH
DGYMATWAAWN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2 		0.620 0.667
HOXC11
M05079_2.00 		Homo sapiens
NRTCGTWAAHN
NDTTWACGAYN		 SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1 		0.620 0.667
HOXC11
M05080_2.00 		Homo sapiens
NDTTWATKRSN
NSYMATWAAHN		 SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2 		0.620 0.667
HOXC11
M05077_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1 		0.620 0.667
HOXC11
M05078_2.00 		Homo sapiens
NDTTTATKRSN
NSYMATAAAHN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2 		0.620 0.667
HOXC11
M05081_2.00 		Homo sapiens
NRTCGTWAANN
NNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1 		0.620 0.667
HOXC11
M05082_2.00 		Homo sapiens
NNTTWAYKRSN
NSYMRTWAANN		 SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2 		0.620 0.667
Hoxd8
M00436_2.00 		Mus musculus
NNWWYNNN
NNNRWWNN		 PBM
Berger et al.(2008)
Hoxd8_2644 		0.617 0.649
HOXD8
M03221_2.00 		Homo sapiens
VHWAATKWDN
NHWMATTWDB		 SELEX
Jolma et al.(2013)
HOXD8_1 		0.617 0.649
HOXD8
M05310_2.00 		Homo sapiens
BTAATKRY
RYMATTAV		 SELEX
Yin et al.(2017)
HOXD8_eDBD_HT-SELEX 		0.617 0.649
HOXD8
M05311_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_1 		0.617 0.649
HOXD8
M05312_2.00 		Homo sapiens
NTWAYGRY
RYCRTWAN		 SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_2 		0.617 0.649
Hoxa6
M00494_2.00 		Mus musculus
NWWATKRNN
NNYMATWWN		 PBM
Berger et al.(2008)
Hoxa6_1040 		0.616 0.649
Ubx
M00558_2.00 		Drosophila melanogaster
NWWAYDDNN
NNHHRTWWN		 PBM
Busser et al.(2012a)
Ubx 		0.616 0.649
Ubx
M03804_2.00 		Drosophila melanogaster
NTAATKRH
DYMATTAN		 SELEX
Nitta et al.(2015)
Ubx_1 		0.616 0.649
HOXA6
M04974_2.00 		Homo sapiens
NNTAATKRVN
NBYMATTANN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX 		0.616 0.649
Ubx
M06499_2.00 		Drosophila melanogaster
NTTAATKR
YMATTAAN		 B1H
Mathelier et al.(2014)
MA0094.2 		0.616 0.649
Ubx
M06273_2.00 		Drosophila melanogaster
NTTAATKR
YMATTAAN		 B1H
Zhu et al.(2011)
Ubx_Cell_FBgn0003944 		0.616 0.649
Ubx
M06274_2.00 		Drosophila melanogaster
TAATKD
HMATTA		 B1H
Zhu et al.(2011)
Ubx_FlyReg_FBgn0003944 		0.616 0.649
Ubx
M06275_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Ubx_SOLEXA_FBgn0003944 		0.616 0.649
Ubx
M09680_2.00 		Drosophila melanogaster
TTAATKR
YMATTAA		 Misc
Kulakovskiy et al.(2009)
Ubx 		0.616 0.649
Ubx
M10788_2.00 		Drosophila melanogaster
NNVNNNNTAATKRNBHNND
HNNDVNYMATTANNNNBNN		 Transfac
Matys et al.(2006)
I$UBX_01 		0.616 0.649
HOXA6
M04975_2.00 		Homo sapiens
NNTAATKRBN
NVYMATTANN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1 		0.616 0.649
HOXA6
M04976_2.00 		Homo sapiens
NTAAYGRY
RYCRTTAN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2 		0.616 0.649
Hoxc6
M00392_2.00 		Mus musculus
TTAATTAB
VTAATTAA		 PBM
Berger et al.(2008)
Hoxc6_3954 		0.616 0.632
abd-A
M03770_2.00 		Drosophila melanogaster
NNTAATKRCN
NGYMATTANN		 SELEX
Nitta et al.(2015)
abd-A_1 		0.616 0.632
abd-A
M03771_2.00 		Drosophila melanogaster
NNTAATKRCN
NGYMATTANN		 SELEX
Nitta et al.(2015)
abd-A_2 		0.616 0.632
abd-A
M06475_2.00 		Drosophila melanogaster
TTAATKA
TMATTAA		 B1H
Mathelier et al.(2014)
MA0206.1 		0.616 0.632
abd-A
M06210_2.00 		Drosophila melanogaster
WTWATKDM
KHMATWAW		 B1H
Zhu et al.(2011)
Abd-A_FlyReg_FBgn0000014 		0.616 0.632
abd-A
M09671_2.00 		Drosophila melanogaster
HTAATKRH
DYMATTAD		 Misc
Kulakovskiy et al.(2009)
abd-A 		0.616 0.632
abd-A
M10778_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$ABDA_Q6 		0.616 0.632
Q8I9J5_9BILA
M02214_2.00 		Spadella cephaloptera
NVTAWTWABN
NVTWAWTABN		 PBM
Weirauch et al.(2014)
pTH6164 		0.616 0.509
Hoxc8
M00391_2.00 		Mus musculus
NNDNYNNNN
NNNNRNHNN		 PBM
Berger et al.(2008)
Hoxc8_3429 		0.615 0.649
Hoxb8
M00517_2.00 		Mus musculus
NWWAYNDNN
NNHNRTWWN		 PBM
Berger et al.(2008)
Hoxb8_3780 		0.615 0.649
HOXB8
M05048_2.00 		Homo sapiens
NTAATKRM
KYMATTAN		 SELEX
Yin et al.(2017)
HOXB8_eDBD_HT-SELEX 		0.615 0.649
HOXC8
M04912_2.00 		Homo sapiens
NYAATTRN
NYAATTRN		 SELEX
Yin et al.(2017)
HOXC8_FL_HT-SELEX 		0.615 0.649
HOXB8
M09141_2.00 		Homo sapiens
BMATHAATCAA
TTGATTDATKV		 Misc
Kulakovskiy et al.(2013)
HXB8_HUMAN.H11MO.0.C 		0.615 0.649
Hoxb8
M09214_2.00 		Mus musculus
BMATHAATCAA
TTGATTDATKV		 Misc
Kulakovskiy et al.(2013)
HXB8_MOUSE.H11MO.0.C 		0.615 0.649
HOXC8
M10636_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXC8_Q3 		0.615 0.649
HOXB8
M05049_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_1 		0.615 0.649
HOXB8
M05050_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_2 		0.615 0.649
HOXC8
M04913_2.00 		Homo sapiens
NYMATKRN
NYMATKRN		 SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_1 		0.615 0.649
HOXC8
M04914_2.00 		Homo sapiens
NTWAYGRY
RYCRTWAN		 SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_2 		0.615 0.649
egl-5
M09581_2.00 		Caenorhabditis elegans
DWTTWATGGS
SCCATWAAWH		 Misc
Heinz et al.(2010)
cElegans-L3-EGL5_modEncode 		0.602 0.561
CBG00023
M02062_2.00 		Caenorhabditis briggsae
NWWATKDNNN
NNNHMATWWN		 PBM
Weirauch et al.(2014)
pTH5778 		0.602 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TTRE_0000023201 Homeodomain 236 292

Links

Other Homeodomain family TFs
Other Trichuris trichiura TFs

1458 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WOX13 Arabidopsis thaliana AT4G35550 D
GRMZM2G038252 Zea mays GRMZM2G038252 D
AMTR_s00044p00155390 Amborella trichopoda AMTR_s00044p00155390 I
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I
BGIOSGA004695 Oryza indica BGIOSGA004695 I
WOX6 Oryza indica BGIOSGA010824 I
BGIOSGA026413 Oryza indica BGIOSGA026413 I
WOX10 Oryza indica BGIOSGA027391 I
Bo11772s010 Brassica oleracea Bo11772s010 I
Bo1g006370 Brassica oleracea Bo1g006370 I
Bo9g070070 Brassica oleracea Bo9g070070 I
Bra011623 Brassica rapa Bra011623 I
Bra017448 Brassica rapa Bra017448 I
Bra023638 Brassica rapa Bra023638 I
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I
BRADI2G53390 Brachypodium distachyon BRADI2G53390 I
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I
F775_11596 Aegilops tauschii F775_11596 I
F775_11947 Aegilops tauschii F775_11947 I
F775_22811 Aegilops tauschii F775_22811 I
GLYMA03G01000 Glycine max GLYMA03G01000 I
GLYMA04G01830 Glycine max GLYMA04G01830 I
GLYMA06G01940 Glycine max GLYMA06G01940 I
GLYMA19G29660 Glycine max GLYMA19G29660 I
GRMZM2G069274 Zea mays GRMZM2G069274 I
GRMZM2G162481 Zea mays GRMZM2G162481 I
GRMZM2G170958 Zea mays GRMZM2G170958 I
GRMZM2G314064 Zea mays GRMZM2G314064 I
GRMZM5G805026 Zea mays GRMZM5G805026 I
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I
GSMUA_Achr1G17980_001 Musa acuminata GSMUA_Achr1G17980_001 I
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I
GSMUA_Achr5G11080_001 Musa acuminata GSMUA_Achr5G11080_001 I
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I
GSMUA_AchrUn_randomG18610_001 Musa acuminata GSMUA_AchrUn_randomG18610_001 I
LPERR01G30370 Leersia perrieri LPERR01G30370 I
LPERR03G13850 Leersia perrieri LPERR03G13850 I
LPERR07G23470 Leersia perrieri LPERR07G23470 I
LPERR07G23520 Leersia perrieri LPERR07G23520 I
MLOC_56124 Hordeum vulgare MLOC_56124 I
MLOC_65745 Hordeum vulgare MLOC_65745 I
MLOC_6669 Hordeum vulgare MLOC_6669 I
MTR_6g027390 Medicago truncatula MTR_6g027390 I
MTR_7g086940 Medicago truncatula MTR_7g086940 I
OB01G44030 Oryza brachyantha OB01G44030 I
OB08G17020 Oryza brachyantha OB08G17020 I
OBART01G35170 Oryza barthii OBART01G35170 I
OBART03G15820 Oryza barthii OBART03G15820 I
OBART07G26670 Oryza barthii OBART07G26670 I
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I
OLONG_016784 Oryza longistaminata OLONG_016784 I
OMERI01G32310 Oryza meridionalis OMERI01G32310 I
OMERI07G23310 Oryza meridionalis OMERI07G23310 I
ONIVA01G40180 Oryza nivara ONIVA01G40180 I
ONIVA07G26430 Oryza nivara ONIVA07G26430 I
ONIVA08G08030 Oryza nivara ONIVA08G08030 I
OPUNC01G34140 Oryza punctata OPUNC01G34140 I
OPUNC03G15320 Oryza punctata OPUNC03G15320 I
OPUNC07G25100 Oryza punctata OPUNC07G25100 I
ORGLA01G0290300 Oryza glaberrima ORGLA01G0290300 I
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I
ORUFI01G38500 Oryza rufipogon ORUFI01G38500 I
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I
WOX8 Oryza sativa OS01G0818400 I
OS03G0325600 Oryza sativa OS03G0325600 I
WOX11 Oryza sativa OS07G0684900 I
WOX10 Oryza sativa OS08G0242400 I
HB-4 Populus trichocarpa POPTR_0005s10480 I
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I
PRUPE_ppa011225mg Prunus persica PRUPE_ppa011225mg I
PRUPE_ppa021400mg Prunus persica PRUPE_ppa021400mg I
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I
Sb01g036670 Sorghum bicolor Sb01g036670 I
Sb02g043300 Sorghum bicolor Sb02g043300 I
Sb03g038080 Sorghum bicolor Sb03g038080 I
Sb07g007600 Sorghum bicolor Sb07g007600 I
HB-4 Arabidopsis lyrata scaffold_700564.1 I
SELMODRAFT_417553 Selaginella moellendorffii SELMODRAFT_417553 I
SELMODRAFT_451015 Selaginella moellendorffii SELMODRAFT_451015 I
SELMODRAFT_451353 Selaginella moellendorffii SELMODRAFT_451353 I
SELMODRAFT_84885 Selaginella moellendorffii SELMODRAFT_84885 I
Si002508m.g Setaria italica Si002508m.g I
Si015065m.g Setaria italica Si015065m.g I
Si030836m.g Setaria italica Si030836m.g I
Si039112m.g Setaria italica Si039112m.g I
TCM_000062 Theobroma cacao TCM_000062 I
TCM_025805 Theobroma cacao TCM_025805 I
TCM_034409 Theobroma cacao TCM_034409 I
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I
Traes_3AL_D0053C177 Triticum aestivum Traes_3AL_D0053C177 I
TRAES3BF057600060CFD_g Triticum aestivum TRAES3BF057600060CFD_g I
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I
TRAES3BF091200090CFD_g Triticum aestivum TRAES3BF091200090CFD_g I
TRAES3BF091200100CFD_g Triticum aestivum TRAES3BF091200100CFD_g I
Traes_3DL_6B1815F7D Triticum aestivum Traes_3DL_6B1815F7D I
Traes_3DS_97BBFFA03 Triticum aestivum Traes_3DS_97BBFFA03 I
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I
TRIUR3_23636 Triticum urartu TRIUR3_23636 I
TRIUR3_34808 Triticum urartu TRIUR3_34808 I
TRIUR3_34876 Triticum urartu TRIUR3_34876 I
VIT_04s0044g00150 Vitis vinifera VIT_04s0044g00150 I
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I
Ca_08180 Cicer arietinum Ca_08180 I
Ca_19701 Cicer arietinum Ca_19701 I
Cla023819 Citrullus lanatus Cla023819 I
Pm022951 Prunus mume Pm022951 I
Pm026793 Prunus mume Pm026793 I
29830.m001452 Ricinus communis 29830.m001452 I
30072.m000927 Ricinus communis 30072.m000927 I
cassava15562.m1 Manihot esculenta cassava15562.m1 I
cassava23423.valid.m1 Manihot esculenta cassava23423.valid.m1 I
cassava4770.m1 Manihot esculenta cassava4770.m1 I
Cucsa.272210 Cucumis sativus Cucsa.272210 I
Cucsa.336980 Cucumis sativus Cucsa.336980 I
gw1.224.39.1 Physcomitrella patens gw1.224.39.1 I
gw1.29.10.1 Physcomitrella patens gw1.29.10.1 I
mgf016673m Mimulus guttatus mgf016673m I
mgf017527m Mimulus guttatus mgf017527m I
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I
Bostr.7867s1413 Boechera stricta Bostr.7867s1413 I
Cagra.2350s0096 Capsella grandiflora Cagra.2350s0096 I
Carubv10005217m.g Capsella rubella Carubv10005217m.g I
Ciclev10002354m.g Citrus clementina Ciclev10002354m.g I
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I
Ciclev10026199m.g Citrus clementina Ciclev10026199m.g I
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I
Eucgr.I02222 Eucalyptus grandis Eucgr.I02222 I
evm.TU.supercontig_6.368 Carica papaya evm.TU.supercontig_6.368 I
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I
gene13035-v1.0-hybrid Fragaria vesca gene13035-v1.0-hybrid I
gene20491-v1.0-hybrid Fragaria vesca gene20491-v1.0-hybrid I
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I
Gorai.001G199200 Gossypium raimondii Gorai.001G199200 I
Gorai.003G002200 Gossypium raimondii Gorai.003G002200 I
Gorai.004G038300 Gossypium raimondii Gorai.004G038300 I
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I
Lus10016026.g Linum usitatissimum Lus10016026.g I
MDP0000136426 Malus domestica MDP0000136426 I
MDP0000304650 Malus domestica MDP0000304650 I
MDP0000316517 Malus domestica MDP0000316517 I
MDP0000524885 Malus domestica MDP0000524885 I
orange1.1g022516m.g Citrus sinensis orange1.1g022516m.g I
orange1.1g026809m.g Citrus sinensis orange1.1g026809m.g I
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I
Pavir.Ea03245 Panicum virgatum Pavir.Ea03245 I
Pavir.Eb03552 Panicum virgatum Pavir.Eb03552 I
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I
Pavir.J23422 Panicum virgatum Pavir.J23422 I
Pavir.J33010 Panicum virgatum Pavir.J33010 I
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I
SapurV1A.1240s0080 Salix purpurea SapurV1A.1240s0080 I
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I
Thhalv10009654m.g Eutrema salsugineum Thhalv10009654m.g I
Thhalv10009917m.g Eutrema salsugineum Thhalv10009917m.g I
Thhalv10025989m.g Eutrema salsugineum Thhalv10025989m.g I
PK07880.1 Cannabis sativa PK07880.1 I
chr1.CM0113.620.nc Lotus japonicus chr1.CM0113.620.nc I
chr5.CM0180.70.nc Lotus japonicus chr5.CM0180.70.nc I
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I
PDK_20s1408301g001 Phoenix dactylifera PDK_20s1408301g001 I
OSTLU_27102 Ostreococcus lucimarinus OSTLU_27102 N
1300010135 Ostreococcus tauri 1300010135 N